5 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L8ER89	Uncharacterized protein. (201 aa)
	A0A1L8EYZ7	Uncharacterized protein. (201 aa)
	dennd1a	UDENN domain-containing protein. (1030 aa)
	A0A1L8GGK5	UDENN domain-containing protein. (668 aa)
	rab35l	Uncharacterized protein. (201 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8ER89	A0A1L8EYZ7	A0A1L8ER89	A0A1L8EYZ7	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8ER89	A0A1L8GGK5	A0A1L8ER89	A0A1L8GGK5	Uncharacterized protein.	UDENN domain-containing protein.	0.812
A0A1L8ER89	dennd1a	A0A1L8ER89	A0A1L8F210	Uncharacterized protein.	UDENN domain-containing protein.	0.889
A0A1L8ER89	rab35l	A0A1L8ER89	A0A1L8I076	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A1L8EYZ7	A0A1L8ER89	A0A1L8EYZ7	A0A1L8ER89	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8EYZ7	A0A1L8GGK5	A0A1L8EYZ7	A0A1L8GGK5	Uncharacterized protein.	UDENN domain-containing protein.	0.812
A0A1L8EYZ7	dennd1a	A0A1L8EYZ7	A0A1L8F210	Uncharacterized protein.	UDENN domain-containing protein.	0.889
A0A1L8EYZ7	rab35l	A0A1L8EYZ7	A0A1L8I076	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A1L8GGK5	A0A1L8ER89	A0A1L8GGK5	A0A1L8ER89	UDENN domain-containing protein.	Uncharacterized protein.	0.812
A0A1L8GGK5	A0A1L8EYZ7	A0A1L8GGK5	A0A1L8EYZ7	UDENN domain-containing protein.	Uncharacterized protein.	0.812
A0A1L8GGK5	dennd1a	A0A1L8GGK5	A0A1L8F210	UDENN domain-containing protein.	UDENN domain-containing protein.	0.660
A0A1L8GGK5	rab35l	A0A1L8GGK5	A0A1L8I076	UDENN domain-containing protein.	Uncharacterized protein.	0.967
dennd1a	A0A1L8ER89	A0A1L8F210	A0A1L8ER89	UDENN domain-containing protein.	Uncharacterized protein.	0.889
dennd1a	A0A1L8EYZ7	A0A1L8F210	A0A1L8EYZ7	UDENN domain-containing protein.	Uncharacterized protein.	0.889
dennd1a	A0A1L8GGK5	A0A1L8F210	A0A1L8GGK5	UDENN domain-containing protein.	UDENN domain-containing protein.	0.660
dennd1a	rab35l	A0A1L8F210	A0A1L8I076	UDENN domain-containing protein.	Uncharacterized protein.	0.977
rab35l	A0A1L8ER89	A0A1L8I076	A0A1L8ER89	Uncharacterized protein.	Uncharacterized protein.	0.901
rab35l	A0A1L8EYZ7	A0A1L8I076	A0A1L8EYZ7	Uncharacterized protein.	Uncharacterized protein.	0.901
rab35l	A0A1L8GGK5	A0A1L8I076	A0A1L8GGK5	Uncharacterized protein.	UDENN domain-containing protein.	0.967
rab35l	dennd1a	A0A1L8I076	A0A1L8F210	Uncharacterized protein.	UDENN domain-containing protein.	0.977