28 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	clasp1	Uncharacterized protein. (1456 aa)
	clip3	Uncharacterized protein. (534 aa)
	slain2l-2	Uncharacterized protein. (612 aa)
	map4	Microtubule-associated protein. (1211 aa)
	Map4.L	Microtubule-associated protein. (1234 aa)
	Map7.S	Uncharacterized protein. (665 aa)
	Mapre3.S	Uncharacterized protein. (316 aa)
	stmn4	Stathmin; Belongs to the stathmin family. (185 aa)
	A0A1L8GDM4	Uncharacterized protein. (2061 aa)
	itfg1	Uncharacterized protein. (601 aa)
	ckap5	Uncharacterized protein. (2065 aa)
	tacc1-2	TACC_C domain-containing protein. (636 aa)
	Stmn1.S	Uncharacterized protein. (242 aa)
	clip2	Uncharacterized protein. (1004 aa)
	stmn1	Stathmin; Belongs to the stathmin family. (145 aa)
	clip2-2	Uncharacterized protein. (1004 aa)
	tacc3	TACC_C domain-containing protein. (931 aa)
	slain2	Uncharacterized protein. (566 aa)
	Clip1.S	Uncharacterized protein. (2319 aa)
	tacc3-2	TACC_C domain-containing protein. (881 aa)
	slain2-2	Uncharacterized protein. (580 aa)
	clip1	Uncharacterized protein. (2362 aa)
	tbcb	MGC132396 protein. (246 aa)
	stmn3	Stathmin; Belongs to the stathmin family. (180 aa)
	stmn2-2	Stathmin; Belongs to the stathmin family. (178 aa)
	stmn3-2	Stathmin; Belongs to the stathmin family. (180 aa)
	mapre1-2	XEB1A. (295 aa)
	xb154	Olfactory receptor. (334 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8GDM4	Clip1.S	A0A1L8GDM4	A0A1L8HQN4	Uncharacterized protein.	Uncharacterized protein.	0.520
A0A1L8GDM4	Mapre3.S	A0A1L8GDM4	A0A1L8G5X6	Uncharacterized protein.	Uncharacterized protein.	0.780
A0A1L8GDM4	clasp1	A0A1L8GDM4	A0A1L8ENL3	Uncharacterized protein.	Uncharacterized protein.	0.457
A0A1L8GDM4	clip1	A0A1L8GDM4	A0A1L8I128	Uncharacterized protein.	Uncharacterized protein.	0.520
A0A1L8GDM4	clip2	A0A1L8GDM4	A0A1L8H8B5	Uncharacterized protein.	Uncharacterized protein.	0.520
A0A1L8GDM4	clip2-2	A0A1L8GDM4	A0A1L8HGB8	Uncharacterized protein.	Uncharacterized protein.	0.520
A0A1L8GDM4	mapre1-2	A0A1L8GDM4	Q8UW78	Uncharacterized protein.	XEB1A.	0.780
A0A1L8GDM4	slain2	A0A1L8GDM4	A0A1L8HLA4	Uncharacterized protein.	Uncharacterized protein.	0.879
A0A1L8GDM4	slain2-2	A0A1L8GDM4	A0A1L8HTS0	Uncharacterized protein.	Uncharacterized protein.	0.879
A0A1L8GDM4	tacc1-2	A0A1L8GDM4	A0A1L8H2C9	Uncharacterized protein.	TACC_C domain-containing protein.	0.567
A0A1L8GDM4	tacc3	A0A1L8GDM4	A0A1L8HKM5	Uncharacterized protein.	TACC_C domain-containing protein.	0.740
A0A1L8GDM4	tacc3-2	A0A1L8GDM4	A0A1L8HT14	Uncharacterized protein.	TACC_C domain-containing protein.	0.897
Clip1.S	A0A1L8GDM4	A0A1L8HQN4	A0A1L8GDM4	Uncharacterized protein.	Uncharacterized protein.	0.520
Clip1.S	Map4.L	A0A1L8HQN4	A0A1L8FUT9	Uncharacterized protein.	Microtubule-associated protein.	0.679
Clip1.S	Mapre3.S	A0A1L8HQN4	A0A1L8G5X6	Uncharacterized protein.	Uncharacterized protein.	0.909
Clip1.S	Stmn1.S	A0A1L8HQN4	A0A1L8H795	Uncharacterized protein.	Uncharacterized protein.	0.428
Clip1.S	ckap5	A0A1L8HQN4	A0A1L8GIT7	Uncharacterized protein.	Uncharacterized protein.	0.943
Clip1.S	clasp1	A0A1L8HQN4	A0A1L8ENL3	Uncharacterized protein.	Uncharacterized protein.	0.951
Clip1.S	clip1	A0A1L8HQN4	A0A1L8I128	Uncharacterized protein.	Uncharacterized protein.	0.900
Clip1.S	itfg1	A0A1L8HQN4	A0A1L8GFF8	Uncharacterized protein.	Uncharacterized protein.	0.882