(24 nodes) Mixed, incl. Establishment of protein localization to endoplasmic reticulum membrane, and Regulation by virus of viral protein levels in host cell network (Xenopus laevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tbc1d20.1	Rab-GAP TBC domain-containing protein. (387 aa)
	rab3gap1	Uncharacterized protein. (980 aa)
	Rab3gap1.L	Uncharacterized protein. (978 aa)
	Ralgds.L	Uncharacterized protein. (816 aa)
	fam91a1	Uncharacterized protein. (839 aa)
	rab18	Uncharacterized protein. (205 aa)
	Tbc1d20.2.L	Rab-GAP TBC domain-containing protein. (388 aa)
	Gabrr2	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (492 aa)
	rab3gap2	Uncharacterized protein. (1390 aa)
	A0A1L8H4W5	Uncharacterized protein. (1292 aa)
	Tbc1d23.S	Uncharacterized protein. (710 aa)
	kiaa0319l	Uncharacterized protein. (1027 aa)
	phactr4	Phosphatase and actin regulator. (694 aa)
	rab30	Uncharacterized protein. (213 aa)
	tbc1d23	Uncharacterized protein. (710 aa)
	cpd	Uncharacterized protein. (1340 aa)
	phactr4-2	Phosphatase and actin regulator. (709 aa)
	kiaa0319l-2	Uncharacterized protein. (1026 aa)
	topors	RING-type domain-containing protein. (1015 aa)
	agtpbp1	Uncharacterized protein. (1226 aa)
	agtpbp1-2	Uncharacterized protein. (1225 aa)
	ubap1	MGC81920 protein. (485 aa)
	rab18-2	RAB18 protein. (206 aa)
	tbc1d20.1-2	MGC52691 protein. (412 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8H4W5	Tbc1d23.S	A0A1L8H4W5	A0A1L8H4Y1	Uncharacterized protein.	Uncharacterized protein.	0.792
A0A1L8H4W5	fam91a1	A0A1L8H4W5	A0A1L8FTS8	Uncharacterized protein.	Uncharacterized protein.	0.877
A0A1L8H4W5	kiaa0319l	A0A1L8H4W5	A0A1L8H7L6	Uncharacterized protein.	Uncharacterized protein.	0.871
A0A1L8H4W5	kiaa0319l-2	A0A1L8H4W5	A0A1L8HF89	Uncharacterized protein.	Uncharacterized protein.	0.871
A0A1L8H4W5	rab30	A0A1L8H4W5	A0A1L8HB45	Uncharacterized protein.	Uncharacterized protein.	0.528
A0A1L8H4W5	tbc1d23	A0A1L8H4W5	A0A1L8HCV9	Uncharacterized protein.	Uncharacterized protein.	0.792
Gabrr2	Tbc1d20.2.L	A0A1L8G365	A0A1L8G0H0	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Rab-GAP TBC domain-containing protein.	0.618
Gabrr2	agtpbp1	A0A1L8G365	A0A1L8HPE2	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein.	0.740
Gabrr2	agtpbp1-2	A0A1L8G365	A0A1L8HYC8	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein.	0.740
Gabrr2	phactr4	A0A1L8G365	A0A1L8H7Q0	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Phosphatase and actin regulator.	0.577
Gabrr2	phactr4-2	A0A1L8G365	A0A1L8HE88	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Phosphatase and actin regulator.	0.577
Gabrr2	rab18	A0A1L8G365	A0A1L8FVI0	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein.	0.476
Gabrr2	rab18-2	A0A1L8G365	Q6GM52	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	RAB18 protein.	0.476
Gabrr2	tbc1d20.1	A0A1L8G365	A0A1L8EKG5	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Rab-GAP TBC domain-containing protein.	0.618
Gabrr2	tbc1d20.1-2	A0A1L8G365	Q8AVX9	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	MGC52691 protein.	0.618
Gabrr2	topors	A0A1L8G365	A0A1L8HNT2	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	RING-type domain-containing protein.	0.428
Rab3gap1.L	Tbc1d20.2.L	A0A1L8EVK4	A0A1L8G0H0	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.523
Rab3gap1.L	rab18	A0A1L8EVK4	A0A1L8FVI0	Uncharacterized protein.	Uncharacterized protein.	0.904
Rab3gap1.L	rab18-2	A0A1L8EVK4	Q6GM52	Uncharacterized protein.	RAB18 protein.	0.904
Rab3gap1.L	rab3gap2	A0A1L8EVK4	A0A1L8G6V3	Uncharacterized protein.	Uncharacterized protein.	0.999