(13 nodes) Mixed, incl. Establishment of protein localization to endoplasmic reticulum membrane, and Regulation by virus of viral protein levels in host cell network (Xenopus laevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tbc1d20.1	Rab-GAP TBC domain-containing protein. (387 aa)
	rab3gap1	Uncharacterized protein. (980 aa)
	Rab3gap1.L	Uncharacterized protein. (978 aa)
	rab18	Uncharacterized protein. (205 aa)
	Tbc1d20.2.L	Rab-GAP TBC domain-containing protein. (388 aa)
	Gabrr2	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (492 aa)
	rab3gap2	Uncharacterized protein. (1390 aa)
	phactr4	Phosphatase and actin regulator. (694 aa)
	phactr4-2	Phosphatase and actin regulator. (709 aa)
	topors	RING-type domain-containing protein. (1015 aa)
	agtpbp1	Uncharacterized protein. (1226 aa)
	rab18-2	RAB18 protein. (206 aa)
	tbc1d20.1-2	MGC52691 protein. (412 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gabrr2	Tbc1d20.2.L	A0A1L8G365	A0A1L8G0H0	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Rab-GAP TBC domain-containing protein.	0.618
Gabrr2	agtpbp1	A0A1L8G365	A0A1L8HPE2	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein.	0.740
Gabrr2	phactr4	A0A1L8G365	A0A1L8H7Q0	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Phosphatase and actin regulator.	0.577
Gabrr2	phactr4-2	A0A1L8G365	A0A1L8HE88	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Phosphatase and actin regulator.	0.577
Gabrr2	rab18	A0A1L8G365	A0A1L8FVI0	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein.	0.476
Gabrr2	rab18-2	A0A1L8G365	Q6GM52	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	RAB18 protein.	0.476
Gabrr2	tbc1d20.1	A0A1L8G365	A0A1L8EKG5	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Rab-GAP TBC domain-containing protein.	0.618
Gabrr2	tbc1d20.1-2	A0A1L8G365	Q8AVX9	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	MGC52691 protein.	0.618
Gabrr2	topors	A0A1L8G365	A0A1L8HNT2	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	RING-type domain-containing protein.	0.428
Rab3gap1.L	Tbc1d20.2.L	A0A1L8EVK4	A0A1L8G0H0	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.523
Rab3gap1.L	rab18	A0A1L8EVK4	A0A1L8FVI0	Uncharacterized protein.	Uncharacterized protein.	0.904
Rab3gap1.L	rab18-2	A0A1L8EVK4	Q6GM52	Uncharacterized protein.	RAB18 protein.	0.904
Rab3gap1.L	rab3gap2	A0A1L8EVK4	A0A1L8G6V3	Uncharacterized protein.	Uncharacterized protein.	0.999
Rab3gap1.L	tbc1d20.1	A0A1L8EVK4	A0A1L8EKG5	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.523
Rab3gap1.L	tbc1d20.1-2	A0A1L8EVK4	Q8AVX9	Uncharacterized protein.	MGC52691 protein.	0.523
Tbc1d20.2.L	Gabrr2	A0A1L8G0H0	A0A1L8G365	Rab-GAP TBC domain-containing protein.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.618
Tbc1d20.2.L	Rab3gap1.L	A0A1L8G0H0	A0A1L8EVK4	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.523
Tbc1d20.2.L	agtpbp1	A0A1L8G0H0	A0A1L8HPE2	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.683
Tbc1d20.2.L	phactr4	A0A1L8G0H0	A0A1L8H7Q0	Rab-GAP TBC domain-containing protein.	Phosphatase and actin regulator.	0.559
Tbc1d20.2.L	phactr4-2	A0A1L8G0H0	A0A1L8HE88	Rab-GAP TBC domain-containing protein.	Phosphatase and actin regulator.	0.559