(22 nodes) Nuclear migration, and Barrier to autointegration factor network (Xenopus laevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sun1	SUN domain-containing protein. (939 aa)
	sun1-2	SUN domain-containing protein. (939 aa)
	syne2.2	KASH domain-containing protein. (1038 aa)
	Syne3.S	KASH domain-containing protein. (1215 aa)
	A0A1L8F524	Uncharacterized protein. (127 aa)
	A0A1L8G0G1	Uncharacterized protein. (4578 aa)
	Baf-l.L	Uncharacterized protein. (112 aa)
	Syne1.L	KASH domain-containing protein. (8474 aa)
	banf1	Uncharacterized protein. (90 aa)
	banf1-2	Uncharacterized protein. (90 aa)
	sun2	SUN domain-containing protein. (709 aa)
	Lemd3.S	LEM domain-containing protein. (782 aa)
	Tmpo.S	Uncharacterized protein. (514 aa)
	lemd3	LEM domain-containing protein. (783 aa)
	Lmnb3.L	Uncharacterized protein; Belongs to the intermediate filament family. (583 aa)
	Lmnb2.S	Uncharacterized protein; Belongs to the intermediate filament family. (666 aa)
	Lmnb1.S	Uncharacterized protein; Belongs to the intermediate filament family. (583 aa)
	emd	Xemd1 protein. (180 aa)
	LOC397912	LOC397912 protein; Belongs to the intermediate filament family. (623 aa)
	lmnb1	Lmnb1-prov protein; Belongs to the intermediate filament family. (584 aa)
	casp6	XCaspase-6 protein; Belongs to the peptidase C14A family. (303 aa)
	lbr	Lamin B receptor. (620 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8F524	Baf-l.L	A0A1L8F524	A0A1L8G712	Uncharacterized protein.	Uncharacterized protein.	0.811
A0A1L8F524	LOC397912	A0A1L8F524	Q6DDM6	Uncharacterized protein.	LOC397912 protein; Belongs to the intermediate filament family.	0.551
A0A1L8F524	Lemd3.S	A0A1L8F524	A0A1L8GUJ5	Uncharacterized protein.	LEM domain-containing protein.	0.678
A0A1L8F524	Lmnb1.S	A0A1L8F524	A0A1L8HQZ0	Uncharacterized protein.	Uncharacterized protein; Belongs to the intermediate filament family.	0.551
A0A1L8F524	Lmnb2.S	A0A1L8F524	A0A1L8HMW2	Uncharacterized protein.	Uncharacterized protein; Belongs to the intermediate filament family.	0.551
A0A1L8F524	Lmnb3.L	A0A1L8F524	A0A1L8H0N6	Uncharacterized protein.	Uncharacterized protein; Belongs to the intermediate filament family.	0.551
A0A1L8F524	Syne1.L	A0A1L8F524	A0A1L8G7Q1	Uncharacterized protein.	KASH domain-containing protein.	0.482
A0A1L8F524	Tmpo.S	A0A1L8F524	A0A1L8GUP5	Uncharacterized protein.	Uncharacterized protein.	0.503
A0A1L8F524	banf1	A0A1L8F524	A0A1L8GCL6	Uncharacterized protein.	Uncharacterized protein.	0.812
A0A1L8F524	banf1-2	A0A1L8F524	A0A1L8GK00	Uncharacterized protein.	Uncharacterized protein.	0.812
A0A1L8F524	casp6	A0A1L8F524	Q9IB66	Uncharacterized protein.	XCaspase-6 protein; Belongs to the peptidase C14A family.	0.969
A0A1L8F524	emd	A0A1L8F524	B7ZPV1	Uncharacterized protein.	Xemd1 protein.	0.945
A0A1L8F524	lbr	A0A1L8F524	Q9W708	Uncharacterized protein.	Lamin B receptor.	0.673
A0A1L8F524	lemd3	A0A1L8F524	A0A1L8GYG3	Uncharacterized protein.	LEM domain-containing protein.	0.678
A0A1L8F524	lmnb1	A0A1L8F524	Q8AVZ3	Uncharacterized protein.	Lmnb1-prov protein; Belongs to the intermediate filament family.	0.524
A0A1L8F524	sun1	A0A1L8F524	A0A1L8EQC6	Uncharacterized protein.	SUN domain-containing protein.	0.699
A0A1L8F524	sun1-2	A0A1L8F524	A0A1L8EXW2	Uncharacterized protein.	SUN domain-containing protein.	0.699
A0A1L8F524	sun2	A0A1L8F524	A0A1L8GNT0	Uncharacterized protein.	SUN domain-containing protein.	0.755
A0A1L8G0G1	Baf-l.L	A0A1L8G0G1	A0A1L8G712	Uncharacterized protein.	Uncharacterized protein.	0.424
A0A1L8G0G1	LOC397912	A0A1L8G0G1	Q6DDM6	Uncharacterized protein.	LOC397912 protein; Belongs to the intermediate filament family.	0.514