36 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L8H8G6	Uncharacterized protein. (114 aa)
	lima1	LIM zinc-binding domain-containing protein. (713 aa)
	Lima1.L	LIM zinc-binding domain-containing protein. (708 aa)
	A0A1L8HMZ9	Thymosin beta; Plays an important role in the organization of the cytoskeleton. Binds to and sequesters actin monomers (G actin) and therefore inhibits actin polymerization. Belongs to the thymosin beta family. (41 aa)
	A0A1L8HW54	Uncharacterized protein. (85 aa)
	LOC100037107	LOC100037107 protein. (190 aa)
	tmsb4x	Thymosin beta; Plays an important role in the organization of the cytoskeleton. Binds to and sequesters actin monomers (G actin) and therefore inhibits actin polymerization. Belongs to the thymosin beta family. (44 aa)
	pfn1	Profilin; Belongs to the profilin family. (138 aa)
	myl3	Myosin light chain 1v. (188 aa)
	myl4	Myosin light chain 1av. (190 aa)
	myl3-2	Myosin light chain 1v. (188 aa)
	A0A1L8EP27	Uncharacterized protein. (161 aa)
	A0A1L8EP29	Cobl domain-containing protein. (145 aa)
	A0A1L8EP40	Uncharacterized protein. (698 aa)
	A0A1L8EPC7	Uncharacterized protein. (62 aa)
	A0A1L8F6N2	Uncharacterized protein. (81 aa)
	pknox2	Homeobox domain-containing protein. (468 aa)
	pknox2-2	Homeobox domain-containing protein. (469 aa)
	A0A1L8FRU0	Uncharacterized protein. (241 aa)
	A0A1L8FRX2	Uncharacterized protein. (728 aa)
	Cobl.L	Uncharacterized protein. (1195 aa)
	mtss1.1-2	Uncharacterized protein. (781 aa)
	mtss1.1	Uncharacterized protein. (784 aa)
	A0A1L8FTG4	Uncharacterized protein. (205 aa)
	fam206a	Uncharacterized protein. (183 aa)
	Pfn4.S	Profilin; Belongs to the profilin family. (172 aa)
	mtss1l	Uncharacterized protein. (737 aa)
	twf2	Uncharacterized protein. (349 aa)
	A0A1L8GHZ7	WH2 domain-containing protein. (647 aa)
	mtss1l-2	Uncharacterized protein. (735 aa)
	twf2-2	Uncharacterized protein. (349 aa)
	A0A1L8GQ74	Uncharacterized protein. (632 aa)
	A0A1L8GU37	WH2 domain-containing protein. (538 aa)
	Twf1.S	Uncharacterized protein. (350 aa)
	twf1	Uncharacterized protein. (350 aa)
	A0A1L8GYY6	WH2 domain-containing protein. (579 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8F6N2	A0A1L8HMZ9	A0A1L8F6N2	A0A1L8HMZ9	Uncharacterized protein.	Thymosin beta; Plays an important role in the organization of the cytoskeleton. Binds to and sequesters actin monomers (G actin) and therefore inhibits actin polymerization. Belongs to the thymosin beta family.	0.915
A0A1L8GHZ7	Cobl.L	A0A1L8GHZ7	A0A1L8FWU3	WH2 domain-containing protein.	Uncharacterized protein.	0.555
A0A1L8GHZ7	Pfn4.S	A0A1L8GHZ7	A0A1L8G5E9	WH2 domain-containing protein.	Profilin; Belongs to the profilin family.	0.493
A0A1L8GHZ7	pfn1	A0A1L8GHZ7	Q3KQ82	WH2 domain-containing protein.	Profilin; Belongs to the profilin family.	0.433
A0A1L8GQ74	Cobl.L	A0A1L8GQ74	A0A1L8FWU3	Uncharacterized protein.	Uncharacterized protein.	0.555
A0A1L8GQ74	Pfn4.S	A0A1L8GQ74	A0A1L8G5E9	Uncharacterized protein.	Profilin; Belongs to the profilin family.	0.493
A0A1L8GQ74	pfn1	A0A1L8GQ74	Q3KQ82	Uncharacterized protein.	Profilin; Belongs to the profilin family.	0.433
A0A1L8GU37	Cobl.L	A0A1L8GU37	A0A1L8FWU3	WH2 domain-containing protein.	Uncharacterized protein.	0.555
A0A1L8GU37	Pfn4.S	A0A1L8GU37	A0A1L8G5E9	WH2 domain-containing protein.	Profilin; Belongs to the profilin family.	0.493
A0A1L8GU37	pfn1	A0A1L8GU37	Q3KQ82	WH2 domain-containing protein.	Profilin; Belongs to the profilin family.	0.433
A0A1L8GYY6	Cobl.L	A0A1L8GYY6	A0A1L8FWU3	WH2 domain-containing protein.	Uncharacterized protein.	0.555
A0A1L8GYY6	Pfn4.S	A0A1L8GYY6	A0A1L8G5E9	WH2 domain-containing protein.	Profilin; Belongs to the profilin family.	0.493
A0A1L8GYY6	pfn1	A0A1L8GYY6	Q3KQ82	WH2 domain-containing protein.	Profilin; Belongs to the profilin family.	0.433
A0A1L8H8G6	Pfn4.S	A0A1L8H8G6	A0A1L8G5E9	Uncharacterized protein.	Profilin; Belongs to the profilin family.	0.700
A0A1L8H8G6	pfn1	A0A1L8H8G6	Q3KQ82	Uncharacterized protein.	Profilin; Belongs to the profilin family.	0.665
A0A1L8HMZ9	A0A1L8F6N2	A0A1L8HMZ9	A0A1L8F6N2	Thymosin beta; Plays an important role in the organization of the cytoskeleton. Binds to and sequesters actin monomers (G actin) and therefore inhibits actin polymerization. Belongs to the thymosin beta family.	Uncharacterized protein.	0.915
Cobl.L	A0A1L8GHZ7	A0A1L8FWU3	A0A1L8GHZ7	Uncharacterized protein.	WH2 domain-containing protein.	0.555
Cobl.L	A0A1L8GQ74	A0A1L8FWU3	A0A1L8GQ74	Uncharacterized protein.	Uncharacterized protein.	0.555
Cobl.L	A0A1L8GU37	A0A1L8FWU3	A0A1L8GU37	Uncharacterized protein.	WH2 domain-containing protein.	0.555
Cobl.L	A0A1L8GYY6	A0A1L8FWU3	A0A1L8GYY6	Uncharacterized protein.	WH2 domain-containing protein.	0.555