(14 nodes) Choline transport network (Xenopus laevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L8HJD2	Uncharacterized protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (569 aa)
	slc44a4	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (707 aa)
	A0A1L8F3L4	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (691 aa)
	A0A1L8EZY9	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (433 aa)
	slc44a1	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (651 aa)
	slc44a1-2	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (651 aa)
	slc5a7	Uncharacterized protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (580 aa)
	A0A1L8H8V6	Uncharacterized protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (561 aa)
	Slc44a2.L	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (710 aa)
	Slc44a5.L	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (747 aa)
	slc44a5	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (711 aa)
	psen1	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (433 aa)
	Sec14l1.L	Uncharacterized protein. (793 aa)
	Sec14l5.S	Uncharacterized protein. (793 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EZY9	psen1	A0A1L8EZY9	A0A1L8FAH5	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.900
A0A1L8F3L4	slc44a4	A0A1L8F3L4	A0A1L8F8H7	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	0.801
Slc44a2.L	slc5a7	A0A1L8H325	A0A1L8HGN2	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	Uncharacterized protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.797
Slc44a5.L	slc5a7	A0A1L8GLR6	A0A1L8HGN2	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	Uncharacterized protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.827
psen1	A0A1L8EZY9	A0A1L8FAH5	A0A1L8EZY9	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.900
slc44a1	slc5a7	A0A1L8HNX7	A0A1L8HGN2	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	Uncharacterized protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.871
slc44a1-2	slc5a7	A0A1L8HXU2	A0A1L8HGN2	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	Uncharacterized protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.871
slc44a4	A0A1L8F3L4	A0A1L8F8H7	A0A1L8F3L4	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	0.801
slc44a4	slc5a7	A0A1L8F8H7	A0A1L8HGN2	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	Uncharacterized protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.553
slc44a5	slc5a7	A0A1L8GFK4	A0A1L8HGN2	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	Uncharacterized protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.827
slc5a7	Slc44a2.L	A0A1L8HGN2	A0A1L8H325	Uncharacterized protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	0.797
slc5a7	Slc44a5.L	A0A1L8HGN2	A0A1L8GLR6	Uncharacterized protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	0.827
slc5a7	slc44a1	A0A1L8HGN2	A0A1L8HNX7	Uncharacterized protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	0.871
slc5a7	slc44a1-2	A0A1L8HGN2	A0A1L8HXU2	Uncharacterized protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	0.871
slc5a7	slc44a4	A0A1L8HGN2	A0A1L8F8H7	Uncharacterized protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	0.553
slc5a7	slc44a5	A0A1L8HGN2	A0A1L8GFK4	Uncharacterized protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.	0.827