39 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A310TL29	Uncharacterized protein. (75 aa)
	ints1	DUF3677 domain-containing protein. (2191 aa)
	A0A1L8F1G0	ECR1_N domain-containing protein. (146 aa)
	Exosc2.L	KH_dom_type_1 domain-containing protein. (154 aa)
	A0A1L8F3A1	VWFA domain-containing protein. (769 aa)
	A0A1L8F537	Uncharacterized protein. (965 aa)
	A0A1L8F7Y8	VWFA domain-containing protein. (896 aa)
	exosc5	RNase_PH domain-containing protein. (286 aa)
	ints3	Uncharacterized protein. (1018 aa)
	A0A1L8FG71	Uncharacterized protein. (204 aa)
	A0A1L8FM59	Uncharacterized protein. (600 aa)
	Exosc7.S	Uncharacterized protein. (282 aa)
	Ints8.S	Uncharacterized protein. (1006 aa)
	A0A1L8FWN1	Uncharacterized protein. (267 aa)
	Ints7.S	Uncharacterized protein. (978 aa)
	Ints9.S	Beta-Casp domain-containing protein. (600 aa)
	A0A1L8GCX3	Uncharacterized protein. (939 aa)
	toe1	C3H1-type domain-containing protein. (520 aa)
	ints5	Uncharacterized protein. (939 aa)
	tut1	RRM domain-containing protein. (864 aa)
	A0A1L8GLH9	RNase_PH domain-containing protein. (268 aa)
	usb1	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (251 aa)
	toe1-2	C3H1-type domain-containing protein. (515 aa)
	ints14	VWFA domain-containing protein. (518 aa)
	ints2	Uncharacterized protein. (1175 aa)
	A0A1L8HAC4	Uncharacterized protein. (974 aa)
	A0A1L8HAF5	RNase_PH domain-containing protein. (113 aa)
	Exosc8.S	Uncharacterized protein. (159 aa)
	Ints6.L	VWFA domain-containing protein. (883 aa)
	A0A1L8HIV8	Uncharacterized protein. (276 aa)
	Ints4.L	Uncharacterized protein. (333 aa)
	A0A1L8HJE7	Vac14_Fab1_bd domain-containing protein. (118 aa)
	ints12	PHD-type domain-containing protein. (464 aa)
	Exosc9.L	Uncharacterized protein. (431 aa)
	ints12-2	PHD-type domain-containing protein. (464 aa)
	ints10	Uncharacterized protein. (737 aa)
	A0A310TKV6	Uncharacterized protein. (105 aa)
	exosc3	MGC84934 protein. (250 aa)
	exosc4	LOC495942 protein. (249 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8F1G0	A0A1L8FWN1	A0A1L8F1G0	A0A1L8FWN1	ECR1_N domain-containing protein.	Uncharacterized protein.	0.990
A0A1L8F1G0	A0A1L8GLH9	A0A1L8F1G0	A0A1L8GLH9	ECR1_N domain-containing protein.	RNase_PH domain-containing protein.	0.993
A0A1L8F1G0	A0A1L8HAF5	A0A1L8F1G0	A0A1L8HAF5	ECR1_N domain-containing protein.	RNase_PH domain-containing protein.	0.966
A0A1L8F1G0	A0A1L8HIV8	A0A1L8F1G0	A0A1L8HIV8	ECR1_N domain-containing protein.	Uncharacterized protein.	0.966
A0A1L8F1G0	Exosc2.L	A0A1L8F1G0	A0A1L8F1G4	ECR1_N domain-containing protein.	KH_dom_type_1 domain-containing protein.	0.457
A0A1L8F1G0	Exosc7.S	A0A1L8F1G0	A0A1L8FRR7	ECR1_N domain-containing protein.	Uncharacterized protein.	0.990
A0A1L8F1G0	Exosc8.S	A0A1L8F1G0	A0A1L8HAP0	ECR1_N domain-containing protein.	Uncharacterized protein.	0.966
A0A1L8F1G0	Exosc9.L	A0A1L8F1G0	A0A1L8HUY5	ECR1_N domain-containing protein.	Uncharacterized protein.	0.995
A0A1L8F1G0	exosc3	A0A1L8F1G0	Q58E93	ECR1_N domain-containing protein.	MGC84934 protein.	0.996
A0A1L8F1G0	exosc4	A0A1L8F1G0	Q5PQ94	ECR1_N domain-containing protein.	LOC495942 protein.	0.997
A0A1L8F1G0	exosc5	A0A1L8F1G0	A0A1L8F8X8	ECR1_N domain-containing protein.	RNase_PH domain-containing protein.	0.996
A0A1L8F1G0	toe1	A0A1L8F1G0	A0A1L8GFN0	ECR1_N domain-containing protein.	C3H1-type domain-containing protein.	0.488
A0A1L8F1G0	toe1-2	A0A1L8F1G0	A0A1L8GM42	ECR1_N domain-containing protein.	C3H1-type domain-containing protein.	0.488
A0A1L8F3A1	A0A1L8F537	A0A1L8F3A1	A0A1L8F537	VWFA domain-containing protein.	Uncharacterized protein.	0.841
A0A1L8F3A1	A0A1L8FG71	A0A1L8F3A1	A0A1L8FG71	VWFA domain-containing protein.	Uncharacterized protein.	0.823
A0A1L8F3A1	A0A1L8FM59	A0A1L8F3A1	A0A1L8FM59	VWFA domain-containing protein.	Uncharacterized protein.	0.823
A0A1L8F3A1	A0A1L8GCX3	A0A1L8F3A1	A0A1L8GCX3	VWFA domain-containing protein.	Uncharacterized protein.	0.819
A0A1L8F3A1	A0A1L8HJE7	A0A1L8F3A1	A0A1L8HJE7	VWFA domain-containing protein.	Vac14_Fab1_bd domain-containing protein.	0.794
A0A1L8F3A1	A0A310TKV6	A0A1L8F3A1	A0A310TKV6	VWFA domain-containing protein.	Uncharacterized protein.	0.820
A0A1L8F3A1	A0A310TL29	A0A1L8F3A1	A0A310TL29	VWFA domain-containing protein.	Uncharacterized protein.	0.746