99 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MGC80266	MGC80266 protein. (208 aa)
	rab9a	Rab9a-b protein. (201 aa)
	rap1a	MGC80662 protein. (185 aa)
	srp54	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (504 aa)
	Q6NRU1_XENLA	Uncharacterized protein. (183 aa)
	rap2b	Small GTPase Rap2. (182 aa)
	rab9a-2	Rab9a-a protein. (201 aa)
	rab21-2	MGC68816 protein. (221 aa)
	rap2a	Rap-2-prov protein. (183 aa)
	dync1li1	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (508 aa)
	srp54-2	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (504 aa)
	rap2c-2	Rap2c-prov protein. (183 aa)
	hras	Small G-protein H-Ras. (189 aa)
	kras-3	LOC397771 protein. (186 aa)
	dync1li1-2	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (508 aa)
	rala	Ras related small G protein RAL-A. (206 aa)
	A0A1L8FEH6	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (182 aa)
	A0A1L8FGY5	Uncharacterized protein. (242 aa)
	kras	Uncharacterized protein. (186 aa)
	A0A1L8FNC2	Uncharacterized protein. (198 aa)
	Rab5a.L	Uncharacterized protein. (216 aa)
	A0A1L8FRW8	Uncharacterized protein. (201 aa)
	rab31	Uncharacterized protein. (194 aa)
	A0A1L8FSN7	Uncharacterized protein. (243 aa)
	gem	Uncharacterized protein. (304 aa)
	rab18	Uncharacterized protein. (205 aa)
	A0A1L8FW83	Uncharacterized protein. (198 aa)
	A0A1L8FYH6	Uncharacterized protein. (155 aa)
	A0A1L8FYJ0	Uncharacterized protein. (377 aa)
	gem-2	Uncharacterized protein. (305 aa)
	A0A1L8G360	Uncharacterized protein. (401 aa)
	A0A1L8G996	Uncharacterized protein. (416 aa)
	A0A1L8GAX7	Uncharacterized protein. (182 aa)
	rras2	Uncharacterized protein. (198 aa)
	Mief1.S	Mab-21 domain-containing protein. (463 aa)
	A0A1L8GID1	Uncharacterized protein. (229 aa)
	A0A1L8GLS8	Uncharacterized protein. (198 aa)
	mief1	Mab-21 domain-containing protein. (415 aa)
	rasl12	Uncharacterized protein. (273 aa)
	A0A1L8GSM8	Uncharacterized protein. (656 aa)
	rap1b	Uncharacterized protein. (184 aa)
	rab21	Uncharacterized protein. (220 aa)
	A0A1L8GYI4	Uncharacterized protein. (215 aa)
	tmem19	Uncharacterized protein. (336 aa)
	A0A1L8H0S2	Uncharacterized protein. (656 aa)
	A0A1L8H181	Uncharacterized protein. (215 aa)
	csde1	Uncharacterized protein. (833 aa)
	Rap1a	Uncharacterized protein. (185 aa)
	A0A1L8H940	Uncharacterized protein. (137 aa)
	rab5b	Uncharacterized protein. (215 aa)
	nras	Uncharacterized protein. (189 aa)
	kras-2	Uncharacterized protein. (187 aa)
	rab27a	LOC494641 protein. (221 aa)
	rab14	LOC494665 protein. (215 aa)
	A0A1L8F921	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (175 aa)
	A0A1L8F6P3	Uncharacterized protein. (201 aa)
	Arf6.S	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (215 aa)
	A0A1L8F2A7	Uncharacterized protein. (201 aa)
	A0A1L8EYZ7	Uncharacterized protein. (201 aa)
	ralb-2	Uncharacterized protein. (206 aa)
	rab22a	Uncharacterized protein. (210 aa)
	rab5c	Uncharacterized protein. (215 aa)
	A0A1L8ER89	Uncharacterized protein. (201 aa)
	A0A1L8EQP4	Uncharacterized protein. (209 aa)
	rab5d	Uncharacterized protein. (213 aa)
	A0A1L8ENK9	Uncharacterized protein. (208 aa)
	krasl	Uncharacterized protein. (187 aa)
	diras3	LOC495976 protein. (198 aa)
	arl2	LOC496366 protein; Belongs to the small GTPase superfamily. Arf family. (184 aa)
	Arf6	Arf6 protein; Belongs to the small GTPase superfamily. Arf family. (175 aa)
	Q52KZ2_XENLA	Uncharacterized protein. (213 aa)
	rap2c	MGC114990 protein. (183 aa)
	LOC398404	LOC398404 protein. (209 aa)
	A0A310UCU9	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (181 aa)
	ralb	Uncharacterized protein. (206 aa)
	A0A1L8ELR6	Uncharacterized protein. (155 aa)
	A0A1L8ELR0	Uncharacterized protein. (206 aa)
	A0A310TNK4	Uncharacterized protein. (721 aa)
	A0A1L8I246	Uncharacterized protein. (585 aa)
	rab35l	Uncharacterized protein. (201 aa)
	A0A1L8HWG2	Uncharacterized protein. (198 aa)
	A0A1L8HTI4	Uncharacterized protein. (221 aa)
	A0A1L8HRY2	Uncharacterized protein. (126 aa)
	A0A1L8HRN0	Uncharacterized protein. (527 aa)
	A0A1L8HPE1	Uncharacterized protein. (199 aa)
	A0A1L8HP99	Uncharacterized protein. (720 aa)
	A0A1L8HN53	Uncharacterized protein. (198 aa)
	Rab5b.L	Uncharacterized protein. (185 aa)
	Csde1.L	Uncharacterized protein. (780 aa)
	A0A1L8HE39	Uncharacterized protein. (293 aa)
	A0A1L8HE12	Uncharacterized protein. (122 aa)
	rit1	Rit1-prov protein. (215 aa)
	arf6.2	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family. (175 aa)
	rab27b	MGC80016 protein. (218 aa)
	rerg	MGC84355 protein. (199 aa)
	diras2	MGC83985 protein. (199 aa)
	rab18-2	RAB18 protein. (206 aa)
	rab27a-2	MGC80943 protein. (221 aa)
	rab29	MGC80435 protein. (204 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8ELR0	A0A1L8F2A7	A0A1L8ELR0	A0A1L8F2A7	Uncharacterized protein.	Uncharacterized protein.	0.495
A0A1L8ELR0	A0A1L8F6P3	A0A1L8ELR0	A0A1L8F6P3	Uncharacterized protein.	Uncharacterized protein.	0.497
A0A1L8ELR0	A0A1L8FYH6	A0A1L8ELR0	A0A1L8FYH6	Uncharacterized protein.	Uncharacterized protein.	0.493
A0A1L8ELR0	rab14	A0A1L8ELR0	Q640I3	Uncharacterized protein.	LOC494665 protein.	0.523
A0A1L8ELR0	rab18	A0A1L8ELR0	A0A1L8FVI0	Uncharacterized protein.	Uncharacterized protein.	0.403
A0A1L8ELR0	rab18-2	A0A1L8ELR0	Q6GM52	Uncharacterized protein.	RAB18 protein.	0.404
A0A1L8ELR0	rab31	A0A1L8ELR0	A0A1L8FSM9	Uncharacterized protein.	Uncharacterized protein.	0.489
A0A1L8ELR0	rab9a	A0A1L8ELR0	Q6GQ88	Uncharacterized protein.	Rab9a-b protein.	0.485
A0A1L8ELR0	rab9a-2	A0A1L8ELR0	Q6NU20	Uncharacterized protein.	Rab9a-a protein.	0.485
A0A1L8ELR6	A0A1L8F2A7	A0A1L8ELR6	A0A1L8F2A7	Uncharacterized protein.	Uncharacterized protein.	0.489
A0A1L8ELR6	A0A1L8F6P3	A0A1L8ELR6	A0A1L8F6P3	Uncharacterized protein.	Uncharacterized protein.	0.489
A0A1L8ELR6	A0A1L8FYH6	A0A1L8ELR6	A0A1L8FYH6	Uncharacterized protein.	Uncharacterized protein.	0.500
A0A1L8ELR6	rab14	A0A1L8ELR6	Q640I3	Uncharacterized protein.	LOC494665 protein.	0.514
A0A1L8ELR6	rab31	A0A1L8ELR6	A0A1L8FSM9	Uncharacterized protein.	Uncharacterized protein.	0.488
A0A1L8ELR6	rab9a	A0A1L8ELR6	Q6GQ88	Uncharacterized protein.	Rab9a-b protein.	0.477
A0A1L8ELR6	rab9a-2	A0A1L8ELR6	Q6NU20	Uncharacterized protein.	Rab9a-a protein.	0.476
A0A1L8ER89	A0A1L8EYZ7	A0A1L8ER89	A0A1L8EYZ7	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8ER89	rab14	A0A1L8ER89	Q640I3	Uncharacterized protein.	LOC494665 protein.	0.448
A0A1L8ER89	rab35l	A0A1L8ER89	A0A1L8I076	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A1L8EYZ7	A0A1L8ER89	A0A1L8EYZ7	A0A1L8ER89	Uncharacterized protein.	Uncharacterized protein.	0.900