12 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sec61g	Uncharacterized protein. (68 aa)
	hspa5	Uncharacterized protein; Belongs to the heat shock protein 70 family. (658 aa)
	Glp1r.S	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (449 aa)
	A0A1L8G6V7	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (452 aa)
	Sec63.L	J domain-containing protein. (737 aa)
	sec61a1	Plug_translocon domain-containing protein. (476 aa)
	Sec62.S	Uncharacterized protein. (404 aa)
	MGC82698	MGC82698 protein. (400 aa)
	sec63	MGC80164 protein. (755 aa)
	sec61a1-2	Sec61a1 protein. (476 aa)
	hspa5-2	Hspa5 protein; Belongs to the heat shock protein 70 family. (655 aa)
	sec61b	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum. (96 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MGC82698	Sec62.S	Q6AZP2	A0A310U1L8	MGC82698 protein.	Uncharacterized protein.	0.902
MGC82698	Sec63.L	Q6AZP2	A0A1L8G8W1	MGC82698 protein.	J domain-containing protein.	0.996
MGC82698	hspa5	Q6AZP2	A0A1L8F6I3	MGC82698 protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.552
MGC82698	hspa5-2	Q6AZP2	Q8AVE3	MGC82698 protein.	Hspa5 protein; Belongs to the heat shock protein 70 family.	0.556
MGC82698	sec61a1	Q6AZP2	A0A1L8GPS0	MGC82698 protein.	Plug_translocon domain-containing protein.	0.947
MGC82698	sec61a1-2	Q6AZP2	Q7ZX87	MGC82698 protein.	Sec61a1 protein.	0.947
MGC82698	sec61b	Q6AZP2	Q8AVT7	MGC82698 protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.964
MGC82698	sec61g	Q6AZP2	A0A1L8FWK5	MGC82698 protein.	Uncharacterized protein.	0.979
MGC82698	sec63	Q6AZP2	Q6GQC5	MGC82698 protein.	MGC80164 protein.	0.996
Sec62.S	MGC82698	A0A310U1L8	Q6AZP2	Uncharacterized protein.	MGC82698 protein.	0.902
Sec62.S	Sec63.L	A0A310U1L8	A0A1L8G8W1	Uncharacterized protein.	J domain-containing protein.	0.999
Sec62.S	hspa5	A0A310U1L8	A0A1L8F6I3	Uncharacterized protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.552
Sec62.S	hspa5-2	A0A310U1L8	Q8AVE3	Uncharacterized protein.	Hspa5 protein; Belongs to the heat shock protein 70 family.	0.609
Sec62.S	sec61a1	A0A310U1L8	A0A1L8GPS0	Uncharacterized protein.	Plug_translocon domain-containing protein.	0.985
Sec62.S	sec61a1-2	A0A310U1L8	Q7ZX87	Uncharacterized protein.	Sec61a1 protein.	0.985
Sec62.S	sec61b	A0A310U1L8	Q8AVT7	Uncharacterized protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.971
Sec62.S	sec61g	A0A310U1L8	A0A1L8FWK5	Uncharacterized protein.	Uncharacterized protein.	0.992
Sec62.S	sec63	A0A310U1L8	Q6GQC5	Uncharacterized protein.	MGC80164 protein.	0.999
Sec63.L	MGC82698	A0A1L8G8W1	Q6AZP2	J domain-containing protein.	MGC82698 protein.	0.996
Sec63.L	Sec62.S	A0A1L8G8W1	A0A310U1L8	J domain-containing protein.	Uncharacterized protein.	0.999