29 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ints5	Uncharacterized protein. (939 aa)
	A0A1L8EQP9	Uncharacterized protein. (891 aa)
	ints1	DUF3677 domain-containing protein. (2191 aa)
	A0A1L8F3A1	VWFA domain-containing protein. (769 aa)
	A0A1L8F537	Uncharacterized protein. (965 aa)
	A0A1L8F7Y8	VWFA domain-containing protein. (896 aa)
	ints3	Uncharacterized protein. (1018 aa)
	A0A1L8FG71	Uncharacterized protein. (204 aa)
	A0A1L8FM59	Uncharacterized protein. (600 aa)
	Ints8.S	Uncharacterized protein. (1006 aa)
	Ints7.S	Uncharacterized protein. (978 aa)
	Ints9.S	Beta-Casp domain-containing protein. (600 aa)
	A0A1L8GCX3	Uncharacterized protein. (939 aa)
	ints13	Uncharacterized protein. (707 aa)
	ints14	VWFA domain-containing protein. (518 aa)
	A0A1L8GVX9	Uncharacterized protein. (248 aa)
	ints2	Uncharacterized protein. (1175 aa)
	A0A1L8HAC4	Uncharacterized protein. (974 aa)
	Ints6.L	VWFA domain-containing protein. (883 aa)
	Ints4.L	Uncharacterized protein. (333 aa)
	A0A1L8HJE7	Vac14_Fab1_bd domain-containing protein. (118 aa)
	ints12	PHD-type domain-containing protein. (464 aa)
	A0A1L8HRR4	Nipped-B protein. (1728 aa)
	ints12-2	PHD-type domain-containing protein. (464 aa)
	ints10	Uncharacterized protein. (737 aa)
	nipbl	Nipped-B protein. (2844 aa)
	A0A310TKV6	Uncharacterized protein. (105 aa)
	A0A310TL29	Uncharacterized protein. (75 aa)
	C7orf26.L	MGC69165 protein. (450 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EQP9	A0A1L8F537	A0A1L8EQP9	A0A1L8F537	Uncharacterized protein.	Uncharacterized protein.	0.882
A0A1L8EQP9	A0A1L8GCX3	A0A1L8EQP9	A0A1L8GCX3	Uncharacterized protein.	Uncharacterized protein.	0.879
A0A1L8EQP9	Ints7.S	A0A1L8EQP9	A0A1L8G173	Uncharacterized protein.	Uncharacterized protein.	0.596
A0A1L8EQP9	ints1	A0A1L8EQP9	A0A1L8EXS4	Uncharacterized protein.	DUF3677 domain-containing protein.	0.928
A0A1L8EQP9	ints3	A0A1L8EQP9	A0A1L8FD93	Uncharacterized protein.	Uncharacterized protein.	0.882
A0A1L8EQP9	ints5	A0A1L8EQP9	A0A1L8GJU2	Uncharacterized protein.	Uncharacterized protein.	0.879
A0A1L8F3A1	A0A1L8F537	A0A1L8F3A1	A0A1L8F537	VWFA domain-containing protein.	Uncharacterized protein.	0.841
A0A1L8F3A1	A0A1L8FG71	A0A1L8F3A1	A0A1L8FG71	VWFA domain-containing protein.	Uncharacterized protein.	0.823
A0A1L8F3A1	A0A1L8FM59	A0A1L8F3A1	A0A1L8FM59	VWFA domain-containing protein.	Uncharacterized protein.	0.823
A0A1L8F3A1	A0A1L8GCX3	A0A1L8F3A1	A0A1L8GCX3	VWFA domain-containing protein.	Uncharacterized protein.	0.819
A0A1L8F3A1	A0A1L8GVX9	A0A1L8F3A1	A0A1L8GVX9	VWFA domain-containing protein.	Uncharacterized protein.	0.816
A0A1L8F3A1	A0A1L8HJE7	A0A1L8F3A1	A0A1L8HJE7	VWFA domain-containing protein.	Vac14_Fab1_bd domain-containing protein.	0.794
A0A1L8F3A1	A0A310TKV6	A0A1L8F3A1	A0A310TKV6	VWFA domain-containing protein.	Uncharacterized protein.	0.820
A0A1L8F3A1	A0A310TL29	A0A1L8F3A1	A0A310TL29	VWFA domain-containing protein.	Uncharacterized protein.	0.746
A0A1L8F3A1	Ints4.L	A0A1L8F3A1	A0A1L8HJE3	VWFA domain-containing protein.	Uncharacterized protein.	0.820
A0A1L8F3A1	Ints7.S	A0A1L8F3A1	A0A1L8G173	VWFA domain-containing protein.	Uncharacterized protein.	0.918
A0A1L8F3A1	Ints8.S	A0A1L8F3A1	A0A1L8FTK5	VWFA domain-containing protein.	Uncharacterized protein.	0.882
A0A1L8F3A1	Ints9.S	A0A1L8F3A1	A0A1L8G5L4	VWFA domain-containing protein.	Beta-Casp domain-containing protein.	0.916
A0A1L8F3A1	ints1	A0A1L8F3A1	A0A1L8EXS4	VWFA domain-containing protein.	DUF3677 domain-containing protein.	0.923
A0A1L8F3A1	ints10	A0A1L8F3A1	A0A1L8HWD7	VWFA domain-containing protein.	Uncharacterized protein.	0.913