23 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L8ER89	Uncharacterized protein. (201 aa)
	A0A1L8EYZ7	Uncharacterized protein. (201 aa)
	A0A1L8F2A7	Uncharacterized protein. (201 aa)
	rab39b	Uncharacterized protein. (213 aa)
	A0A1L8F6P3	Uncharacterized protein. (201 aa)
	rab39b-2	Uncharacterized protein. (213 aa)
	A0A1L8F8W0	Uncharacterized protein. (207 aa)
	A0A1L8FSN7	Uncharacterized protein. (243 aa)
	A0A1L8FYJ0	Uncharacterized protein. (377 aa)
	A0A1L8G1J2	KLRAQ domain-containing protein. (827 aa)
	Ppp1r21.L	KLRAQ domain-containing protein. (776 aa)
	rab21	Uncharacterized protein. (220 aa)
	tmem19	Uncharacterized protein. (336 aa)
	rab30	Uncharacterized protein. (213 aa)
	A0A1L8HJW4	Uncharacterized protein. (203 aa)
	rab33b	Uncharacterized protein. (226 aa)
	Rab33b.L	Uncharacterized protein. (226 aa)
	rab35l	Uncharacterized protein. (201 aa)
	rab33a	MGC84415 protein. (215 aa)
	rab9a	Rab9a-b protein. (201 aa)
	rab9a-2	Rab9a-a protein. (201 aa)
	rab21-2	MGC68816 protein. (221 aa)
	Rab4a	Rab4a-prov protein. (213 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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Export your current network:

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8ER89	A0A1L8EYZ7	A0A1L8ER89	A0A1L8EYZ7	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8ER89	rab35l	A0A1L8ER89	A0A1L8I076	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A1L8EYZ7	A0A1L8ER89	A0A1L8EYZ7	A0A1L8ER89	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8EYZ7	rab35l	A0A1L8EYZ7	A0A1L8I076	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A1L8F2A7	A0A1L8F8W0	A0A1L8F2A7	A0A1L8F8W0	Uncharacterized protein.	Uncharacterized protein.	0.448
A0A1L8F2A7	Rab33b.L	A0A1L8F2A7	A0A1L8HUP7	Uncharacterized protein.	Uncharacterized protein.	0.456
A0A1L8F2A7	Rab4a	A0A1L8F2A7	Q7ZXI8	Uncharacterized protein.	Rab4a-prov protein.	0.445
A0A1L8F2A7	rab33a	A0A1L8F2A7	Q6DJF1	Uncharacterized protein.	MGC84415 protein.	0.524
A0A1L8F2A7	rab33b	A0A1L8F2A7	A0A1L8HLW3	Uncharacterized protein.	Uncharacterized protein.	0.453
A0A1L8F6P3	A0A1L8F8W0	A0A1L8F6P3	A0A1L8F8W0	Uncharacterized protein.	Uncharacterized protein.	0.449
A0A1L8F6P3	Rab33b.L	A0A1L8F6P3	A0A1L8HUP7	Uncharacterized protein.	Uncharacterized protein.	0.458
A0A1L8F6P3	Rab4a	A0A1L8F6P3	Q7ZXI8	Uncharacterized protein.	Rab4a-prov protein.	0.446
A0A1L8F6P3	rab33a	A0A1L8F6P3	Q6DJF1	Uncharacterized protein.	MGC84415 protein.	0.529
A0A1L8F6P3	rab33b	A0A1L8F6P3	A0A1L8HLW3	Uncharacterized protein.	Uncharacterized protein.	0.455
A0A1L8F8W0	A0A1L8F2A7	A0A1L8F8W0	A0A1L8F2A7	Uncharacterized protein.	Uncharacterized protein.	0.448
A0A1L8F8W0	A0A1L8F6P3	A0A1L8F8W0	A0A1L8F6P3	Uncharacterized protein.	Uncharacterized protein.	0.449
A0A1L8F8W0	A0A1L8FSN7	A0A1L8F8W0	A0A1L8FSN7	Uncharacterized protein.	Uncharacterized protein.	0.435
A0A1L8F8W0	A0A1L8FYJ0	A0A1L8F8W0	A0A1L8FYJ0	Uncharacterized protein.	Uncharacterized protein.	0.436
A0A1L8F8W0	rab39b	A0A1L8F8W0	A0A1L8F2P1	Uncharacterized protein.	Uncharacterized protein.	0.432
A0A1L8F8W0	rab39b-2	A0A1L8F8W0	A0A1L8F7C2	Uncharacterized protein.	Uncharacterized protein.	0.432