51 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	scamp2	Secretory carrier-associated membrane protein. (331 aa)
	scamp3	Secretory carrier-associated membrane protein. (348 aa)
	scamp2-2	Secretory carrier-associated membrane protein. (327 aa)
	nsg2-2	MGC115031 protein. (182 aa)
	scamp1-2	Secretory carrier-associated membrane protein. (336 aa)
	cabp7-2	Uncharacterized protein. (215 aa)
	arfip1	AH domain-containing protein. (396 aa)
	Tmem165.L	GDT1 family protein. (254 aa)
	nsg1-2	Uncharacterized protein. (185 aa)
	scamp1	Secretory carrier-associated membrane protein. (336 aa)
	cabp7	Uncharacterized protein. (215 aa)
	A0A1L8HLT7	AH domain-containing protein. (341 aa)
	A0A1L8HLM0	RING-CH-type domain-containing protein. (269 aa)
	tmem165	GDT1 family protein. (254 aa)
	nsg1	Uncharacterized protein. (185 aa)
	A0A1L8HJN3	AH domain-containing protein. (392 aa)
	Atp7b.L	Uncharacterized protein. (1546 aa)
	A0A1L8HG92	Uncharacterized protein. (225 aa)
	A0A1L8HBV4	Uncharacterized protein. (80 aa)
	Atp7b.S	Uncharacterized protein. (1503 aa)
	Caln1.S	Uncharacterized protein. (224 aa)
	A0A1L8H3A0	t-SNARE coiled-coil homology domain-containing protein. (322 aa)
	scamp5.2-2	Secretory carrier-associated membrane protein. (235 aa)
	A0A1L8H045	Secretory carrier-associated membrane protein. (266 aa)
	Lgr5.L	G_PROTEIN_RECEP_F1_2 domain-containing protein. (902 aa)
	nsg2	Uncharacterized protein. (182 aa)
	lgr5	G_PROTEIN_RECEP_F1_2 domain-containing protein. (902 aa)
	scamp5.2	Secretory carrier-associated membrane protein. (235 aa)
	scamp5.1	Secretory carrier-associated membrane protein. (270 aa)
	A0A1L8GMR0	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (256 aa)
	A0A1L8GG53	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (334 aa)
	bok-2	Uncharacterized protein. (214 aa)
	aftph-2	Clathrin_bdg domain-containing protein. (871 aa)
	bok	Uncharacterized protein. (214 aa)
	aftph	Clathrin_bdg domain-containing protein. (861 aa)
	vps13b	Uncharacterized protein. (4031 aa)
	impad1-2	Uncharacterized protein. (356 aa)
	A0A1L8FYH6	Uncharacterized protein. (155 aa)
	impad1	Uncharacterized protein. (351 aa)
	rab31	Uncharacterized protein. (194 aa)
	tmem79-2	Uncharacterized protein. (518 aa)
	clba1-2	Clathrin_bdg domain-containing protein. (291 aa)
	A0A1L8F919	Uncharacterized protein. (534 aa)
	atp7a	Uncharacterized protein. (1503 aa)
	clip3	Uncharacterized protein. (534 aa)
	clba1	Clathrin_bdg domain-containing protein. (290 aa)
	A0A1L8EYQ3	LLGL domain-containing protein. (1049 aa)
	A0A1L8EU78	ZnMc domain-containing protein. (603 aa)
	Llgl1.S	WD_REPEATS_REGION domain-containing protein. (999 aa)
	A0A1L8EMN6	ZnMc domain-containing protein. (603 aa)
	tepsin	ENTH domain-containing protein. (561 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8F919	A0A1L8FYH6	A0A1L8F919	A0A1L8FYH6	Uncharacterized protein.	Uncharacterized protein.	0.414
A0A1L8F919	rab31	A0A1L8F919	A0A1L8FSM9	Uncharacterized protein.	Uncharacterized protein.	0.414
A0A1L8FYH6	A0A1L8F919	A0A1L8FYH6	A0A1L8F919	Uncharacterized protein.	Uncharacterized protein.	0.414
A0A1L8FYH6	clip3	A0A1L8FYH6	A0A1L8F405	Uncharacterized protein.	Uncharacterized protein.	0.414
Tmem165.L	impad1	A0A1L8HTR8	A0A1L8FT60	GDT1 family protein.	Uncharacterized protein.	0.825
Tmem165.L	impad1-2	A0A1L8HTR8	A0A1L8FZ44	GDT1 family protein.	Uncharacterized protein.	0.825
clip3	A0A1L8FYH6	A0A1L8F405	A0A1L8FYH6	Uncharacterized protein.	Uncharacterized protein.	0.414
clip3	rab31	A0A1L8F405	A0A1L8FSM9	Uncharacterized protein.	Uncharacterized protein.	0.414
impad1	Tmem165.L	A0A1L8FT60	A0A1L8HTR8	Uncharacterized protein.	GDT1 family protein.	0.825
impad1	impad1-2	A0A1L8FT60	A0A1L8FZ44	Uncharacterized protein.	Uncharacterized protein.	0.900
impad1	tmem165	A0A1L8FT60	A0A1L8HL78	Uncharacterized protein.	GDT1 family protein.	0.825
impad1-2	Tmem165.L	A0A1L8FZ44	A0A1L8HTR8	Uncharacterized protein.	GDT1 family protein.	0.825
impad1-2	impad1	A0A1L8FZ44	A0A1L8FT60	Uncharacterized protein.	Uncharacterized protein.	0.900
impad1-2	tmem165	A0A1L8FZ44	A0A1L8HL78	Uncharacterized protein.	GDT1 family protein.	0.825
rab31	A0A1L8F919	A0A1L8FSM9	A0A1L8F919	Uncharacterized protein.	Uncharacterized protein.	0.414
rab31	clip3	A0A1L8FSM9	A0A1L8F405	Uncharacterized protein.	Uncharacterized protein.	0.414
tmem165	impad1	A0A1L8HL78	A0A1L8FT60	GDT1 family protein.	Uncharacterized protein.	0.825
tmem165	impad1-2	A0A1L8HL78	A0A1L8FZ44	GDT1 family protein.	Uncharacterized protein.	0.825