(30 nodes) Secretory granule organization network (Xenopus laevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tbc1d20.1	Rab-GAP TBC domain-containing protein. (387 aa)
	Ccdc136.S	Uncharacterized protein. (418 aa)
	A0A1L8GWY6	HMG box domain-containing protein. (386 aa)
	vps33b	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (615 aa)
	Kcne1.S	Uncharacterized protein. (189 aa)
	znf385a	Uncharacterized protein. (403 aa)
	znf385a-2	Uncharacterized protein. (406 aa)
	hps4	Uncharacterized protein. (683 aa)
	zpbp2	Zona pellucida binding protein. (334 aa)
	serpine2-2	Protease nexin-1; Belongs to the serpin family. (395 aa)
	tbc1d20.1-2	MGC52691 protein. (412 aa)
	creb1	Creb1-prov protein. (324 aa)
	kcne1	Voltage-gated potassium channel subunit MinK. (118 aa)
	Tmf1.L	TMF_TATA_bd domain-containing protein. (1092 aa)
	tmf1	TMF_TATA_bd domain-containing protein. (1096 aa)
	agfg1	Arf-GAP domain-containing protein. (554 aa)
	tbpl1	Uncharacterized protein. (186 aa)
	Agfg1.S	Arf-GAP domain-containing protein. (551 aa)
	serpine2	SERPIN domain-containing protein; Belongs to the serpin family. (395 aa)
	Tbc1d20.2.L	Rab-GAP TBC domain-containing protein. (388 aa)
	vps13b	Uncharacterized protein. (4031 aa)
	Dtnbp1.L	Uncharacterized protein. (317 aa)
	Aqp1.L	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (274 aa)
	Aqp1.S	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (274 aa)
	Snx19.S	Uncharacterized protein. (1117 aa)
	A0A1L8FEA9	Uncharacterized protein. (384 aa)
	A0A1L8FB08	Knl1_RWD_C domain-containing protein. (2585 aa)
	A0A1L8F8A0	Uncharacterized protein. (188 aa)
	A0A1L8F498	Uncharacterized protein. (1841 aa)
	A0A1L8EX51	Uncharacterized protein. (327 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8F8A0	Dtnbp1.L	A0A1L8F8A0	A0A1L8FY33	Uncharacterized protein.	Uncharacterized protein.	0.796
A0A1L8F8A0	hps4	A0A1L8F8A0	A0A1L8I067	Uncharacterized protein.	Uncharacterized protein.	0.578
A0A1L8FEA9	zpbp2	A0A1L8FEA9	A3F966	Uncharacterized protein.	Zona pellucida binding protein.	0.569
Dtnbp1.L	A0A1L8F8A0	A0A1L8FY33	A0A1L8F8A0	Uncharacterized protein.	Uncharacterized protein.	0.796
Kcne1.S	kcne1	A0A1L8H5D1	Q8AWZ9	Uncharacterized protein.	Voltage-gated potassium channel subunit MinK.	0.901
hps4	A0A1L8F8A0	A0A1L8I067	A0A1L8F8A0	Uncharacterized protein.	Uncharacterized protein.	0.578
kcne1	Kcne1.S	Q8AWZ9	A0A1L8H5D1	Voltage-gated potassium channel subunit MinK.	Uncharacterized protein.	0.901
zpbp2	A0A1L8FEA9	A3F966	A0A1L8FEA9	Zona pellucida binding protein.	Uncharacterized protein.	0.569