62 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L8G634	Uncharacterized protein. (4386 aa)
	Itga4.S	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1073 aa)
	Fn1.S	Uncharacterized protein. (2480 aa)
	micall2	Uncharacterized protein. (961 aa)
	A0A1L8ES58	AIP3 domain-containing protein. (1606 aa)
	itga4	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1027 aa)
	A0A1L8EWN9	Uncharacterized protein. (2484 aa)
	Itgav.L	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1080 aa)
	micall2-2	Uncharacterized protein. (967 aa)
	Tyro3.S	Uncharacterized protein. (832 aa)
	A0A1L8F1F8	Uncharacterized protein. (742 aa)
	axl	Uncharacterized protein. (890 aa)
	efna1	Ephrin RBD domain-containing protein; Belongs to the ephrin family. (216 aa)
	Ntng2.L	Uncharacterized protein. (724 aa)
	axl-2	Uncharacterized protein. (896 aa)
	A0A1L8FDF6	Ephrin RBD domain-containing protein; Belongs to the ephrin family. (301 aa)
	A0A1L8FGH7	V-SNARE coiled-coil homology domain-containing protein. (191 aa)
	A0A1L8FQN3	Neuropilin; Belongs to the neuropilin family. (883 aa)
	nrp1	Neuropilin; Belongs to the neuropilin family. (926 aa)
	A0A1L8G142	Uncharacterized protein. (1451 aa)
	bves	Uncharacterized protein. (347 aa)
	fndc3b	Uncharacterized protein. (1205 aa)
	mertk	Uncharacterized protein. (979 aa)
	bves-2	Uncharacterized protein. (349 aa)
	fndc3b-2	Uncharacterized protein. (1204 aa)
	A0A1L8GDR9	Uncharacterized protein. (372 aa)
	lamc1	Uncharacterized protein. (1595 aa)
	A0A1L8GGH8	Laminin N-terminal domain-containing protein. (506 aa)
	lamb2	Uncharacterized protein. (1783 aa)
	A0A1L8GHT6	Uncharacterized protein. (1853 aa)
	A0A1L8GIE6	Uncharacterized protein. (171 aa)
	A0A1L8GIH6	Uncharacterized protein. (372 aa)
	A0A1L8GJQ6	PH domain-containing protein. (660 aa)
	lamc1-2	Uncharacterized protein. (1595 aa)
	A0A1L8GN69	Uncharacterized protein. (540 aa)
	A0A1L8GN93	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1598 aa)
	A0A1L8GPL7	Uncharacterized protein. (898 aa)
	A0A1L8GPU2	Uncharacterized protein. (1852 aa)
	Lamb2.L	Uncharacterized protein. (1793 aa)
	Parvg.S	Uncharacterized protein. (314 aa)
	lamb1	Uncharacterized protein. (1785 aa)
	A0A1L8GUI9	Uncharacterized protein. (630 aa)
	A0A1L8GW33	Uncharacterized protein. (305 aa)
	A0A1L8GW39	Uncharacterized protein. (312 aa)
	A0A1L8GYE7	Uncharacterized protein. (627 aa)
	lamb1-2	Uncharacterized protein. (1785 aa)
	lamb3	Uncharacterized protein. (1157 aa)
	Fzd4.S	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family. (523 aa)
	A0A1L8HBK8	Protein kinase domain-containing protein. (116 aa)
	A0A1L8HBL4	ANK_REP_REGION domain-containing protein. (263 aa)
	A0A1L8HDW1	Uncharacterized protein. (808 aa)
	A0A1L8HJF4	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family. (456 aa)
	A0A1L8HJM7	Uncharacterized protein. (492 aa)
	ap1ar	Uncharacterized protein. (290 aa)
	tek	Uncharacterized protein. (1126 aa)
	ap1ar-2	Uncharacterized protein. (291 aa)
	A0A1L8HYK8	Uncharacterized protein. (1009 aa)
	A0A310TSJ1	CUB domain-containing protein. (99 aa)
	itgb3	Integrin beta; Belongs to the integrin beta chain family. (788 aa)
	parvb	MGC115486 protein. (365 aa)
	vamp1	LOC495063 protein. (101 aa)
	A0A1L8EKV9	AIP3 domain-containing protein. (1709 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8G142	A0A1L8GHT6	A0A1L8G142	A0A1L8GHT6	Uncharacterized protein.	Uncharacterized protein.	0.612
A0A1L8G142	A0A1L8GPU2	A0A1L8G142	A0A1L8GPU2	Uncharacterized protein.	Uncharacterized protein.	0.612
A0A1L8G142	A0A1L8HDW1	A0A1L8G142	A0A1L8HDW1	Uncharacterized protein.	Uncharacterized protein.	0.612
A0A1L8G142	Lamb2.L	A0A1L8G142	A0A1L8GPU6	Uncharacterized protein.	Uncharacterized protein.	0.612
A0A1L8G142	lamb1	A0A1L8G142	A0A1L8GU36	Uncharacterized protein.	Uncharacterized protein.	0.612
A0A1L8G142	lamb1-2	A0A1L8G142	A0A1L8GZ69	Uncharacterized protein.	Uncharacterized protein.	0.612
A0A1L8G142	lamb2	A0A1L8G142	A0A1L8GHT1	Uncharacterized protein.	Uncharacterized protein.	0.612
A0A1L8G142	lamb3	A0A1L8G142	A0A1L8H6F1	Uncharacterized protein.	Uncharacterized protein.	0.662
A0A1L8G142	lamc1	A0A1L8G142	A0A1L8GG24	Uncharacterized protein.	Uncharacterized protein.	0.752
A0A1L8G142	lamc1-2	A0A1L8G142	A0A1L8GMP9	Uncharacterized protein.	Uncharacterized protein.	0.752
A0A1L8G634	A0A1L8GHT6	A0A1L8G634	A0A1L8GHT6	Uncharacterized protein.	Uncharacterized protein.	0.612
A0A1L8G634	A0A1L8GPU2	A0A1L8G634	A0A1L8GPU2	Uncharacterized protein.	Uncharacterized protein.	0.612
A0A1L8G634	A0A1L8HDW1	A0A1L8G634	A0A1L8HDW1	Uncharacterized protein.	Uncharacterized protein.	0.612
A0A1L8G634	Lamb2.L	A0A1L8G634	A0A1L8GPU6	Uncharacterized protein.	Uncharacterized protein.	0.612
A0A1L8G634	lamb1	A0A1L8G634	A0A1L8GU36	Uncharacterized protein.	Uncharacterized protein.	0.612
A0A1L8G634	lamb1-2	A0A1L8G634	A0A1L8GZ69	Uncharacterized protein.	Uncharacterized protein.	0.612
A0A1L8G634	lamb2	A0A1L8G634	A0A1L8GHT1	Uncharacterized protein.	Uncharacterized protein.	0.612
A0A1L8G634	lamb3	A0A1L8G634	A0A1L8H6F1	Uncharacterized protein.	Uncharacterized protein.	0.662
A0A1L8G634	lamc1	A0A1L8G634	A0A1L8GG24	Uncharacterized protein.	Uncharacterized protein.	0.752
A0A1L8G634	lamc1-2	A0A1L8G634	A0A1L8GMP9	Uncharacterized protein.	Uncharacterized protein.	0.752