(26 nodes) cAMP response element binding network (Xenopus laevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Jun.L	BZIP domain-containing protein; Belongs to the bZIP family. (314 aa)
	atf6-2	BZIP domain-containing protein. (646 aa)
	creb3l2	BZIP domain-containing protein. (525 aa)
	hmga2-2	MGC81571 protein. (105 aa)
	hmga2	LOC100158391 protein. (105 aa)
	Creb3.S	BZIP domain-containing protein. (446 aa)
	A0A1L8HYA8	BZIP domain-containing protein. (436 aa)
	A0A1L8HVY5	Uncharacterized protein. (192 aa)
	A0A1L8HIH1	BZIP domain-containing protein. (534 aa)
	atf7	Uncharacterized protein. (468 aa)
	c-Jun	C-Jun protein; Belongs to the bZIP family. (312 aa)
	creb1	Creb1-prov protein. (324 aa)
	A0A1L8EPC5	Uncharacterized protein. (486 aa)
	E4f1.S	Uncharacterized protein. (482 aa)
	atf2	Uncharacterized protein. (486 aa)
	A0A1L8EX51	Uncharacterized protein. (327 aa)
	e4f1	Uncharacterized protein. (774 aa)
	A0A1L8F3Q0	BZIP domain-containing protein. (789 aa)
	creb3l4	BZIP domain-containing protein. (434 aa)
	atf6b	BZIP domain-containing protein. (610 aa)
	creb3l4-2	BZIP domain-containing protein. (458 aa)
	Creb5.S	Uncharacterized protein. (496 aa)
	creb5	Uncharacterized protein. (501 aa)
	A0A1L8GE31	BZIP domain-containing protein. (418 aa)
	atf6	BZIP domain-containing protein. (635 aa)
	creb3l1	BZIP domain-containing protein. (474 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EPC5	A0A1L8HYA8	A0A1L8EPC5	A0A1L8HYA8	Uncharacterized protein.	BZIP domain-containing protein.	0.815
A0A1L8EPC5	Jun.L	A0A1L8EPC5	A0A1L8GLZ4	Uncharacterized protein.	BZIP domain-containing protein; Belongs to the bZIP family.	0.815
A0A1L8EPC5	atf2	A0A1L8EPC5	A0A1L8EWJ3	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8EPC5	c-Jun	A0A1L8EPC5	Q9PVZ1	Uncharacterized protein.	C-Jun protein; Belongs to the bZIP family.	0.815
A0A1L8EX51	A0A1L8GE31	A0A1L8EX51	A0A1L8GE31	Uncharacterized protein.	BZIP domain-containing protein.	0.509
A0A1L8EX51	A0A1L8HVY5	A0A1L8EX51	A0A1L8HVY5	Uncharacterized protein.	Uncharacterized protein.	0.432
A0A1L8EX51	A0A1L8HYA8	A0A1L8EX51	A0A1L8HYA8	Uncharacterized protein.	BZIP domain-containing protein.	0.515
A0A1L8EX51	Creb3.S	A0A1L8EX51	A0A310UEK6	Uncharacterized protein.	BZIP domain-containing protein.	0.424
A0A1L8EX51	Jun.L	A0A1L8EX51	A0A1L8GLZ4	Uncharacterized protein.	BZIP domain-containing protein; Belongs to the bZIP family.	0.515
A0A1L8EX51	c-Jun	A0A1L8EX51	Q9PVZ1	Uncharacterized protein.	C-Jun protein; Belongs to the bZIP family.	0.515
A0A1L8EX51	creb3l1	A0A1L8EX51	A0A1L8GIS4	Uncharacterized protein.	BZIP domain-containing protein.	0.509
A0A1L8GE31	A0A1L8EX51	A0A1L8GE31	A0A1L8EX51	BZIP domain-containing protein.	Uncharacterized protein.	0.509
A0A1L8GE31	creb1	A0A1L8GE31	Q8AVY5	BZIP domain-containing protein.	Creb1-prov protein.	0.509
A0A1L8HIH1	A0A1L8HYA8	A0A1L8HIH1	A0A1L8HYA8	BZIP domain-containing protein.	BZIP domain-containing protein.	0.815
A0A1L8HIH1	Jun.L	A0A1L8HIH1	A0A1L8GLZ4	BZIP domain-containing protein.	BZIP domain-containing protein; Belongs to the bZIP family.	0.815
A0A1L8HIH1	c-Jun	A0A1L8HIH1	Q9PVZ1	BZIP domain-containing protein.	C-Jun protein; Belongs to the bZIP family.	0.815
A0A1L8HVY5	A0A1L8EX51	A0A1L8HVY5	A0A1L8EX51	Uncharacterized protein.	Uncharacterized protein.	0.432
A0A1L8HVY5	creb1	A0A1L8HVY5	Q8AVY5	Uncharacterized protein.	Creb1-prov protein.	0.432
A0A1L8HYA8	A0A1L8EPC5	A0A1L8HYA8	A0A1L8EPC5	BZIP domain-containing protein.	Uncharacterized protein.	0.815
A0A1L8HYA8	A0A1L8EX51	A0A1L8HYA8	A0A1L8EX51	BZIP domain-containing protein.	Uncharacterized protein.	0.515