19 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	prph-2	Peripherin-2. (346 aa)
	A0A1L8EYA0	Uncharacterized protein. (1461 aa)
	A0A1L8EZV1	Uncharacterized protein. (364 aa)
	crb2	Uncharacterized protein. (1472 aa)
	Cdhr1.L	Uncharacterized protein. (872 aa)
	nphp4.2	Uncharacterized protein. (1440 aa)
	Rp1.L	Uncharacterized protein. (1863 aa)
	C2orf71.S	Uncharacterized protein. (1262 aa)
	C2orf71.L	Uncharacterized protein. (1310 aa)
	Ahi1.L	Uncharacterized protein. (1124 aa)
	mfsd2b	Uncharacterized protein. (511 aa)
	A0A1L8GN74	Uncharacterized protein. (1390 aa)
	A0A1L8GTC8	TPR_REGION domain-containing protein. (516 aa)
	ift20	Uncharacterized protein. (132 aa)
	Mfsd2a.S	Uncharacterized protein. (526 aa)
	mfsd2a	LOC100101290 protein. (524 aa)
	ift20-2	Intraflagellar transport protein 20. (132 aa)
	MGC84108	MGC84108 protein. (364 aa)
	prph2	MGC64379 protein. (350 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EYA0	A0A1L8GTC8	A0A1L8EYA0	A0A1L8GTC8	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.634
A0A1L8EYA0	ift20	A0A1L8EYA0	A0A1L8H621	Uncharacterized protein.	Uncharacterized protein.	0.821
A0A1L8EYA0	ift20-2	A0A1L8EYA0	B7ZQ18	Uncharacterized protein.	Intraflagellar transport protein 20.	0.821
A0A1L8EYA0	nphp4.2	A0A1L8EYA0	A0A1L8FMG3	Uncharacterized protein.	Uncharacterized protein.	0.617
A0A1L8GTC8	A0A1L8EYA0	A0A1L8GTC8	A0A1L8EYA0	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.634
A0A1L8GTC8	ift20	A0A1L8GTC8	A0A1L8H621	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.628
A0A1L8GTC8	ift20-2	A0A1L8GTC8	B7ZQ18	TPR_REGION domain-containing protein.	Intraflagellar transport protein 20.	0.628
A0A1L8GTC8	nphp4.2	A0A1L8GTC8	A0A1L8FMG3	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.567
Ahi1.L	ift20	A0A1L8G8R3	A0A1L8H621	Uncharacterized protein.	Uncharacterized protein.	0.641
Ahi1.L	ift20-2	A0A1L8G8R3	B7ZQ18	Uncharacterized protein.	Intraflagellar transport protein 20.	0.643
Ahi1.L	nphp4.2	A0A1L8G8R3	A0A1L8FMG3	Uncharacterized protein.	Uncharacterized protein.	0.850
Cdhr1.L	prph-2	A0A1L8FKA9	Q8UUU5	Uncharacterized protein.	Peripherin-2.	0.709
Cdhr1.L	prph2	A0A1L8FKA9	Q7SY89	Uncharacterized protein.	MGC64379 protein.	0.709
ift20	A0A1L8EYA0	A0A1L8H621	A0A1L8EYA0	Uncharacterized protein.	Uncharacterized protein.	0.821
ift20	A0A1L8GTC8	A0A1L8H621	A0A1L8GTC8	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.628
ift20	Ahi1.L	A0A1L8H621	A0A1L8G8R3	Uncharacterized protein.	Uncharacterized protein.	0.641
ift20	nphp4.2	A0A1L8H621	A0A1L8FMG3	Uncharacterized protein.	Uncharacterized protein.	0.680
ift20-2	A0A1L8EYA0	B7ZQ18	A0A1L8EYA0	Intraflagellar transport protein 20.	Uncharacterized protein.	0.821
ift20-2	A0A1L8GTC8	B7ZQ18	A0A1L8GTC8	Intraflagellar transport protein 20.	TPR_REGION domain-containing protein.	0.628
ift20-2	Ahi1.L	B7ZQ18	A0A1L8G8R3	Intraflagellar transport protein 20.	Uncharacterized protein.	0.643