22 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L8FJV6	CAP-ZIP_m domain-containing protein. (1318 aa)
	A0A1L8F921	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (175 aa)
	Arf6.S	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (215 aa)
	A0A1L8EYZ7	Uncharacterized protein. (201 aa)
	A0A1L8ER89	Uncharacterized protein. (201 aa)
	arf6.2	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family. (175 aa)
	lrrc1	Scribble-related protein 1. (524 aa)
	vps35-2	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (796 aa)
	Arf6	Arf6 protein; Belongs to the small GTPase superfamily. Arf family. (175 aa)
	rab35l	Uncharacterized protein. (201 aa)
	akap11-2	Uncharacterized protein. (1825 aa)
	akap11	Uncharacterized protein. (1858 aa)
	A0A1L8GW28	Uncharacterized protein. (420 aa)
	Pacsin2.S	Uncharacterized protein. (477 aa)
	micall1-2	Uncharacterized protein. (802 aa)
	vps35	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (797 aa)
	tollip-2	CUE domain-containing protein. (269 aa)
	micall1	Uncharacterized protein. (811 aa)
	tollip	CUE domain-containing protein. (269 aa)
	Lrrc1.S	Uncharacterized protein. (607 aa)
	Scrib.L	Uncharacterized protein. (1825 aa)
	Scrib.S	Uncharacterized protein. (1826 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8ER89	A0A1L8EYZ7	A0A1L8ER89	A0A1L8EYZ7	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8ER89	rab35l	A0A1L8ER89	A0A1L8I076	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A1L8EYZ7	A0A1L8ER89	A0A1L8EYZ7	A0A1L8ER89	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8EYZ7	rab35l	A0A1L8EYZ7	A0A1L8I076	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A1L8FJV6	vps35	A0A1L8FJV6	A0A1L8GLA7	CAP-ZIP_m domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.724
A0A1L8FJV6	vps35-2	A0A1L8FJV6	Q5FWV1	CAP-ZIP_m domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.724
Arf6	micall1	Q5EAX8	A0A1L8GH45	Arf6 protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.526
Arf6	micall1-2	Q5EAX8	A0A1L8GNY0	Arf6 protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.526
Arf6	rab35l	Q5EAX8	A0A1L8I076	Arf6 protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.518
Arf6.S	micall1	A0A1L8F420	A0A1L8GH45	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.527
Arf6.S	micall1-2	A0A1L8F420	A0A1L8GNY0	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.527
Arf6.S	rab35l	A0A1L8F420	A0A1L8I076	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.516
Scrib.L	Scrib.S	A0A1L8G0G2	A0A1L8FUA2	Uncharacterized protein.	Uncharacterized protein.	0.900
Scrib.S	Scrib.L	A0A1L8FUA2	A0A1L8G0G2	Uncharacterized protein.	Uncharacterized protein.	0.900
arf6.2	micall1	Q6DE46	A0A1L8GH45	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.527
arf6.2	micall1-2	Q6DE46	A0A1L8GNY0	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.527
arf6.2	rab35l	Q6DE46	A0A1L8I076	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.511
micall1	Arf6	A0A1L8GH45	Q5EAX8	Uncharacterized protein.	Arf6 protein; Belongs to the small GTPase superfamily. Arf family.	0.526
micall1	Arf6.S	A0A1L8GH45	A0A1L8F420	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.527
micall1	arf6.2	A0A1L8GH45	Q6DE46	Uncharacterized protein.	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	0.527