10 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L8F4Z8	Uncharacterized protein. (65 aa)
	A0A1L8FCA2	Uncharacterized protein. (474 aa)
	A0A1L8FCR9	Uncharacterized protein. (530 aa)
	A0A1L8FCS2	Uncharacterized protein. (498 aa)
	Fcrg2	Uncharacterized protein. (163 aa)
	Cd247.L	Uncharacterized protein. (217 aa)
	A0A1L8HCB6	Uncharacterized protein. (151 aa)
	Kit.S	Mast/stem cell growth factor receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (963 aa)
	Kit.L	Mast/stem cell growth factor receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (964 aa)
	G67.L	Uncharacterized protein. (718 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8F4Z8	A0A1L8FCR9	A0A1L8F4Z8	A0A1L8FCR9	Uncharacterized protein.	Uncharacterized protein.	0.651
A0A1L8F4Z8	A0A1L8FCS2	A0A1L8F4Z8	A0A1L8FCS2	Uncharacterized protein.	Uncharacterized protein.	0.651
A0A1L8F4Z8	A0A1L8HCB6	A0A1L8F4Z8	A0A1L8HCB6	Uncharacterized protein.	Uncharacterized protein.	0.481
A0A1L8F4Z8	Cd247.L	A0A1L8F4Z8	A0A1L8H5J4	Uncharacterized protein.	Uncharacterized protein.	0.481
A0A1L8F4Z8	Fcrg2	A0A1L8F4Z8	A0A1L8FD19	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A1L8FCR9	A0A1L8F4Z8	A0A1L8FCR9	A0A1L8F4Z8	Uncharacterized protein.	Uncharacterized protein.	0.651
A0A1L8FCR9	A0A1L8HCB6	A0A1L8FCR9	A0A1L8HCB6	Uncharacterized protein.	Uncharacterized protein.	0.570
A0A1L8FCR9	Cd247.L	A0A1L8FCR9	A0A1L8H5J4	Uncharacterized protein.	Uncharacterized protein.	0.570
A0A1L8FCR9	Fcrg2	A0A1L8FCR9	A0A1L8FD19	Uncharacterized protein.	Uncharacterized protein.	0.651
A0A1L8FCS2	A0A1L8F4Z8	A0A1L8FCS2	A0A1L8F4Z8	Uncharacterized protein.	Uncharacterized protein.	0.651
A0A1L8FCS2	A0A1L8HCB6	A0A1L8FCS2	A0A1L8HCB6	Uncharacterized protein.	Uncharacterized protein.	0.570
A0A1L8FCS2	Cd247.L	A0A1L8FCS2	A0A1L8H5J4	Uncharacterized protein.	Uncharacterized protein.	0.570
A0A1L8FCS2	Fcrg2	A0A1L8FCS2	A0A1L8FD19	Uncharacterized protein.	Uncharacterized protein.	0.651
A0A1L8HCB6	A0A1L8F4Z8	A0A1L8HCB6	A0A1L8F4Z8	Uncharacterized protein.	Uncharacterized protein.	0.481
A0A1L8HCB6	A0A1L8FCR9	A0A1L8HCB6	A0A1L8FCR9	Uncharacterized protein.	Uncharacterized protein.	0.570
A0A1L8HCB6	A0A1L8FCS2	A0A1L8HCB6	A0A1L8FCS2	Uncharacterized protein.	Uncharacterized protein.	0.570
A0A1L8HCB6	Fcrg2	A0A1L8HCB6	A0A1L8FD19	Uncharacterized protein.	Uncharacterized protein.	0.481
Cd247.L	A0A1L8F4Z8	A0A1L8H5J4	A0A1L8F4Z8	Uncharacterized protein.	Uncharacterized protein.	0.481
Cd247.L	A0A1L8FCR9	A0A1L8H5J4	A0A1L8FCR9	Uncharacterized protein.	Uncharacterized protein.	0.570
Cd247.L	A0A1L8FCS2	A0A1L8H5J4	A0A1L8FCS2	Uncharacterized protein.	Uncharacterized protein.	0.570