44 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L8EP81	Uncharacterized protein. (125 aa)
	traf3ip1	Uncharacterized protein. (622 aa)
	A0A1L8ETI7	Uncharacterized protein. (1085 aa)
	ttc21b	Uncharacterized protein. (1320 aa)
	traf3ip1-2	Uncharacterized protein. (624 aa)
	A0A1L8EYA0	Uncharacterized protein. (1461 aa)
	ift43	Uncharacterized protein. (201 aa)
	A0A1L8FLF4	Uncharacterized protein. (370 aa)
	A0A1L8FQG6	Uncharacterized protein. (156 aa)
	wdr60	Uncharacterized protein. (1113 aa)
	ttc30a	Uncharacterized protein. (651 aa)
	Ttc21a.L	Uncharacterized protein. (1312 aa)
	wdr60-2	Uncharacterized protein. (1139 aa)
	Mak.L	Protein kinase domain-containing protein. (649 aa)
	A0A1L8G1B7	Uncharacterized protein. (359 aa)
	Tctex1d2.S	Uncharacterized protein. (124 aa)
	wdr35	WD repeat-containing protein 35. (1181 aa)
	A0A1L8G8W8	Lebercilin domain-containing protein. (656 aa)
	ick	Protein kinase domain-containing protein. (617 aa)
	tctex1d2	Uncharacterized protein. (124 aa)
	ift172	Uncharacterized protein. (1749 aa)
	Ssx2ip.S	Uncharacterized protein. (554 aa)
	Ift27.S	Uncharacterized protein. (178 aa)
	A0A1L8GLN2	Uncharacterized protein. (504 aa)
	ttc26	Uncharacterized protein. (554 aa)
	ift27	Uncharacterized protein. (186 aa)
	ift122	WD_REPEATS_REGION domain-containing protein. (1189 aa)
	A0A1L8H320	Uncharacterized protein. (705 aa)
	ift20	Uncharacterized protein. (132 aa)
	Ift57.S	Ig-like domain-containing protein. (411 aa)
	ift88	Uncharacterized protein. (823 aa)
	Dync2h1.L	Uncharacterized protein. (2548 aa)
	ift74	Uncharacterized protein. (600 aa)
	ift81	IFT81_CH domain-containing protein. (674 aa)
	wdr19	WD_REPEATS_REGION domain-containing protein. (1344 aa)
	Pcm1.L	PCM1_C domain-containing protein. (2031 aa)
	Bbs12.L	Uncharacterized protein. (673 aa)
	ift81-2	IFT81_CH domain-containing protein. (674 aa)
	Ift46.S	Uncharacterized protein. (368 aa)
	ift20-2	Intraflagellar transport protein 20. (132 aa)
	LOC734172	RPGR. (727 aa)
	ift74-2	MGC99338 protein. (600 aa)
	hspb11	MGC99123 protein. (139 aa)
	ssna1	MGC80776 protein. (116 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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Export your current network:

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EP81	A0A1L8EYA0	A0A1L8EP81	A0A1L8EYA0	Uncharacterized protein.	Uncharacterized protein.	0.981
A0A1L8EP81	A0A1L8FLF4	A0A1L8EP81	A0A1L8FLF4	Uncharacterized protein.	Uncharacterized protein.	0.478
A0A1L8EP81	A0A1L8G1B7	A0A1L8EP81	A0A1L8G1B7	Uncharacterized protein.	Uncharacterized protein.	0.774
A0A1L8EP81	Dync2h1.L	A0A1L8EP81	A0A1L8HJ96	Uncharacterized protein.	Uncharacterized protein.	0.574
A0A1L8EP81	Ift46.S	A0A1L8EP81	A0A310TNL1	Uncharacterized protein.	Uncharacterized protein.	0.478
A0A1L8EP81	Ift57.S	A0A1L8EP81	A0A1L8H8C7	Uncharacterized protein.	Ig-like domain-containing protein.	0.611
A0A1L8EP81	LOC734172	A0A1L8EP81	B7ZR07	Uncharacterized protein.	RPGR.	0.536
A0A1L8EP81	Tctex1d2.S	A0A1L8EP81	A0A1L8G3R9	Uncharacterized protein.	Uncharacterized protein.	0.462
A0A1L8EP81	hspb11	A0A1L8EP81	Q66GV7	Uncharacterized protein.	MGC99123 protein.	0.666
A0A1L8EP81	ift122	A0A1L8EP81	A0A1L8GPM1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.990
A0A1L8EP81	ift172	A0A1L8EP81	A0A1L8GCV5	Uncharacterized protein.	Uncharacterized protein.	0.615
A0A1L8EP81	ift20	A0A1L8EP81	A0A1L8H621	Uncharacterized protein.	Uncharacterized protein.	0.651
A0A1L8EP81	ift20-2	A0A1L8EP81	B7ZQ18	Uncharacterized protein.	Intraflagellar transport protein 20.	0.651
A0A1L8EP81	ift43	A0A1L8EP81	A0A1L8F9B0	Uncharacterized protein.	Uncharacterized protein.	0.989
A0A1L8EP81	ift74	A0A1L8EP81	A0A1L8HNY5	Uncharacterized protein.	Uncharacterized protein.	0.669
A0A1L8EP81	ift74-2	A0A1L8EP81	Q5FV80	Uncharacterized protein.	MGC99338 protein.	0.669
A0A1L8EP81	ift81	A0A1L8EP81	A0A1L8HQQ1	Uncharacterized protein.	IFT81_CH domain-containing protein.	0.648
A0A1L8EP81	ift81-2	A0A1L8EP81	A0A1L8I137	Uncharacterized protein.	IFT81_CH domain-containing protein.	0.648
A0A1L8EP81	ift88	A0A1L8EP81	A0A1L8HAP4	Uncharacterized protein.	Uncharacterized protein.	0.775
A0A1L8EP81	tctex1d2	A0A1L8EP81	A0A1L8GA99	Uncharacterized protein.	Uncharacterized protein.	0.462