55 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gas1	Uncharacterized protein. (299 aa)
	A0A1L8H804	TBX domain-containing protein. (642 aa)
	A0A1L8HA36	Homeobox domain-containing protein. (309 aa)
	A0A1L8HAE8	Uncharacterized protein. (2957 aa)
	A0A1L8HIF1	Homeobox domain-containing protein. (309 aa)
	frem2	Uncharacterized protein. (3108 aa)
	msx1	Homeobox domain-containing protein. (275 aa)
	A0A1L8HLI5	BHLH domain-containing protein. (272 aa)
	Intu.S	PDZ domain-containing protein. (951 aa)
	A0A1L8HRY9	Mothers against decapentaplegic homolog. (549 aa)
	hand2	BHLH domain-containing protein. (210 aa)
	sfrp2	Uncharacterized protein. (295 aa)
	gas1-2	Uncharacterized protein. (284 aa)
	A0A1L8I2V3	Mothers against decapentaplegic homolog. (510 aa)
	A0A310TMV5	Uncharacterized protein. (3124 aa)
	mks1	Mks1 protein. (561 aa)
	msx1-2	LOC100125666 protein. (273 aa)
	nog	Noggin; Belongs to the noggin family. (222 aa)
	tbx3-A	Transcription repression factor Tbx3. (716 aa)
	Tbx2	T-box transcription factor Tbx2. (688 aa)
	hoxd11	MGC131014 protein. (274 aa)
	ctnnb1	Beta-catenin protein. (781 aa)
	ctnnb1-2	Ctnnb1-prov protein. (781 aa)
	sfrp2-2	Sfrp2-prov protein. (298 aa)
	tbx3	Transcription factor Tbx3. (711 aa)
	A0A1L8G7I9	Uncharacterized protein. (453 aa)
	A0A1L8H3C9	Uncharacterized protein. (118 aa)
	osr1	Uncharacterized protein. (259 aa)
	wdpcp	Uncharacterized protein. (708 aa)
	bcl2l11-2	Uncharacterized protein. (194 aa)
	A0A1L8EP79	Uncharacterized protein. (788 aa)
	Hoxd13.S	Homeobox domain-containing protein. (296 aa)
	A0A1L8EPB4	Homeobox domain-containing protein. (274 aa)
	A0A1L8EQU0	Uncharacterized protein. (176 aa)
	A0A1L8EW93	Uncharacterized protein. (793 aa)
	hoxd13	Homeobox domain-containing protein. (299 aa)
	A0A1L8EYA0	Uncharacterized protein. (1461 aa)
	b9d1	Uncharacterized protein. (236 aa)
	A0A1L8FDB0	Mothers against decapentaplegic homolog. (514 aa)
	A0A1L8FG23	Uncharacterized protein. (658 aa)
	Bax.L	Uncharacterized protein. (221 aa)
	A0A1L8FLW6	Uncharacterized protein. (660 aa)
	hoxa11	Homeobox domain-containing protein. (298 aa)
	gli3	Uncharacterized protein. (1565 aa)
	impad1	Uncharacterized protein. (351 aa)
	osr2	Uncharacterized protein. (271 aa)
	hoxa11-2	Homeobox domain-containing protein. (299 aa)
	gli3-2	Uncharacterized protein. (1568 aa)
	impad1-2	Uncharacterized protein. (356 aa)
	osr2-2	Uncharacterized protein. (312 aa)
	bcl2l11	Uncharacterized protein. (194 aa)
	A0A1L8GY96	Carbohydrate sulfotransferase. (352 aa)
	A0A1L8GUW0	Carbohydrate sulfotransferase. (352 aa)
	Lrp5.L	Uncharacterized protein. (1517 aa)
	osr1-2	Uncharacterized protein. (259 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EP79	A0A1L8EW93	A0A1L8EP79	A0A1L8EW93	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8EQU0	A0A1L8EYA0	A0A1L8EQU0	A0A1L8EYA0	Uncharacterized protein.	Uncharacterized protein.	0.477
A0A1L8EQU0	A0A1L8H3C9	A0A1L8EQU0	A0A1L8H3C9	Uncharacterized protein.	Uncharacterized protein.	0.629
A0A1L8EQU0	mks1	A0A1L8EQU0	A1L105	Uncharacterized protein.	Mks1 protein.	0.920
A0A1L8EW93	A0A1L8EP79	A0A1L8EW93	A0A1L8EP79	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8EYA0	A0A1L8EQU0	A0A1L8EYA0	A0A1L8EQU0	Uncharacterized protein.	Uncharacterized protein.	0.477
A0A1L8EYA0	Intu.S	A0A1L8EYA0	A0A1L8HLW4	Uncharacterized protein.	PDZ domain-containing protein.	0.690
A0A1L8EYA0	b9d1	A0A1L8EYA0	A0A1L8EYI2	Uncharacterized protein.	Uncharacterized protein.	0.477
A0A1L8EYA0	mks1	A0A1L8EYA0	A1L105	Uncharacterized protein.	Mks1 protein.	0.457
A0A1L8FDB0	ctnnb1	A0A1L8FDB0	Q63ZT4	Mothers against decapentaplegic homolog.	Beta-catenin protein.	0.606
A0A1L8FDB0	ctnnb1-2	A0A1L8FDB0	Q7ZX35	Mothers against decapentaplegic homolog.	Ctnnb1-prov protein.	0.561
A0A1L8G7I9	wdpcp	A0A1L8G7I9	A0A1L8G790	Uncharacterized protein.	Uncharacterized protein.	0.622
A0A1L8H3C9	A0A1L8EQU0	A0A1L8H3C9	A0A1L8EQU0	Uncharacterized protein.	Uncharacterized protein.	0.629
A0A1L8H3C9	b9d1	A0A1L8H3C9	A0A1L8EYI2	Uncharacterized protein.	Uncharacterized protein.	0.629
A0A1L8H3C9	mks1	A0A1L8H3C9	A1L105	Uncharacterized protein.	Mks1 protein.	0.453
A0A1L8HRY9	ctnnb1	A0A1L8HRY9	Q63ZT4	Mothers against decapentaplegic homolog.	Beta-catenin protein.	0.626
A0A1L8HRY9	ctnnb1-2	A0A1L8HRY9	Q7ZX35	Mothers against decapentaplegic homolog.	Ctnnb1-prov protein.	0.561
A0A1L8I2V3	ctnnb1	A0A1L8I2V3	Q63ZT4	Mothers against decapentaplegic homolog.	Beta-catenin protein.	0.606
A0A1L8I2V3	ctnnb1-2	A0A1L8I2V3	Q7ZX35	Mothers against decapentaplegic homolog.	Ctnnb1-prov protein.	0.561
Bax.L	bcl2l11	A0A1L8FH04	A0A1L8G1Y7	Uncharacterized protein.	Uncharacterized protein.	0.988