11 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L8FHW0	Uncharacterized protein. (480 aa)
	clip3	Uncharacterized protein. (534 aa)
	A0A1L8F919	Uncharacterized protein. (534 aa)
	Psap.S	Uncharacterized protein. (512 aa)
	Psap.L	Uncharacterized protein. (518 aa)
	Mag.L	Uncharacterized protein. (625 aa)
	lyn	Tyrosine-protein kinase. (508 aa)
	epdr1	Uncharacterized protein. (220 aa)
	lyn-2	Tyrosine-protein kinase. (508 aa)
	Rtn4r.S	Uncharacterized protein. (494 aa)
	Rtn4r.L	Uncharacterized protein. (494 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8FHW0	Rtn4r.L	A0A1L8FHW0	A0A1L8I065	Uncharacterized protein.	Uncharacterized protein.	0.607
A0A1L8FHW0	Rtn4r.S	A0A1L8FHW0	A0A1L8HQ46	Uncharacterized protein.	Uncharacterized protein.	0.607
Mag.L	Rtn4r.L	A0A1L8FPS9	A0A1L8I065	Uncharacterized protein.	Uncharacterized protein.	0.607
Mag.L	Rtn4r.S	A0A1L8FPS9	A0A1L8HQ46	Uncharacterized protein.	Uncharacterized protein.	0.607
Psap.L	Psap.S	A0A1L8FK30	A0A1L8FF90	Uncharacterized protein.	Uncharacterized protein.	0.900
Psap.S	Psap.L	A0A1L8FF90	A0A1L8FK30	Uncharacterized protein.	Uncharacterized protein.	0.900
Rtn4r.L	A0A1L8FHW0	A0A1L8I065	A0A1L8FHW0	Uncharacterized protein.	Uncharacterized protein.	0.607
Rtn4r.L	Mag.L	A0A1L8I065	A0A1L8FPS9	Uncharacterized protein.	Uncharacterized protein.	0.607
Rtn4r.S	A0A1L8FHW0	A0A1L8HQ46	A0A1L8FHW0	Uncharacterized protein.	Uncharacterized protein.	0.607
Rtn4r.S	Mag.L	A0A1L8HQ46	A0A1L8FPS9	Uncharacterized protein.	Uncharacterized protein.	0.607