(41 nodes) Photoreceptor cell maintenance network (Xenopus laevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	crb2	Uncharacterized protein. (1472 aa)
	A0A1L8EUD3	ANK_REP_REGION domain-containing protein. (615 aa)
	ush1g	ANK_REP_REGION domain-containing protein. (465 aa)
	mkks	Uncharacterized protein. (572 aa)
	A0A1L8G6P8	Uncharacterized protein. (376 aa)
	A0A1L8G8W8	Lebercilin domain-containing protein. (656 aa)
	usp45	Ubiquitin carboxyl-terminal hydrolase. (806 aa)
	clrn1-2	Uncharacterized protein. (232 aa)
	A0A1L8GBB1	Uncharacterized protein. (1978 aa)
	A0A1L8GC64	Uncharacterized protein. (248 aa)
	A0A1L8GCE3	Uncharacterized protein. (1719 aa)
	A0A1L8GED0	Uncharacterized protein. (988 aa)
	Bbs2.S	Uncharacterized protein. (761 aa)
	A0A1L8GHL0	Rhodopsin. (354 aa)
	A0A1L8GI58	Uncharacterized protein. (933 aa)
	bbs1	BBS1 domain-containing protein. (588 aa)
	A0A1L8GN74	Uncharacterized protein. (1390 aa)
	Rho.L	Rhodopsin. (459 aa)
	Opsin	Rhodopsin. (403 aa)
	A0A1L8GTC8	TPR_REGION domain-containing protein. (516 aa)
	nxnl1	Thioredoxin-like_fold domain-containing protein. (215 aa)
	bsg	Uncharacterized protein. (387 aa)
	A0A1L8HPD3	Thioredoxin-like_fold domain-containing protein. (156 aa)
	Bbs12.L	Uncharacterized protein. (673 aa)
	A0A1L8I1S8	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (6189 aa)
	bsg-2	LOC100037021 protein. (387 aa)
	bbs10	MGC84945 protein. (641 aa)
	cln8-2	MGC83128 protein. (290 aa)
	nxnl2	MGC83491 protein. (156 aa)
	iqcb1	MGC81507 protein. (594 aa)
	A0A1L8G634	Uncharacterized protein. (4386 aa)
	A0A1L8G5N1	Uncharacterized protein. (1996 aa)
	cln8	TLC domain-containing protein. (285 aa)
	A0A1L8G142	Uncharacterized protein. (1451 aa)
	Rp1.L	Uncharacterized protein. (1863 aa)
	A0A1L8FPA2	Uncharacterized protein. (1894 aa)
	nphp4.2	Uncharacterized protein. (1440 aa)
	ercc6	Uncharacterized protein. (1370 aa)
	Cdhr1.L	Uncharacterized protein. (872 aa)
	spata7	Uncharacterized protein. (557 aa)
	Crb2.L	Uncharacterized protein. (1120 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EUD3	A0A1L8G142	A0A1L8EUD3	A0A1L8G142	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.505
A0A1L8EUD3	A0A1L8G634	A0A1L8EUD3	A0A1L8G634	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.505
A0A1L8EUD3	A0A1L8GED0	A0A1L8EUD3	A0A1L8GED0	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.964
A0A1L8EUD3	A0A1L8GI58	A0A1L8EUD3	A0A1L8GI58	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.964
A0A1L8EUD3	A0A1L8I1S8	A0A1L8EUD3	A0A1L8I1S8	ANK_REP_REGION domain-containing protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.574
A0A1L8FPA2	A0A1L8GTC8	A0A1L8FPA2	A0A1L8GTC8	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.462
A0A1L8FPA2	ercc6	A0A1L8FPA2	A0A1L8FKT9	Uncharacterized protein.	Uncharacterized protein.	0.649
A0A1L8G142	A0A1L8EUD3	A0A1L8G142	A0A1L8EUD3	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.505
A0A1L8G142	A0A1L8G8W8	A0A1L8G142	A0A1L8G8W8	Uncharacterized protein.	Lebercilin domain-containing protein.	0.563
A0A1L8G142	A0A1L8GED0	A0A1L8G142	A0A1L8GED0	Uncharacterized protein.	Uncharacterized protein.	0.557
A0A1L8G142	A0A1L8GI58	A0A1L8G142	A0A1L8GI58	Uncharacterized protein.	Uncharacterized protein.	0.557
A0A1L8G142	A0A1L8I1S8	A0A1L8G142	A0A1L8I1S8	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.571
A0A1L8G142	clrn1-2	A0A1L8G142	A0A1L8GAV9	Uncharacterized protein.	Uncharacterized protein.	0.566
A0A1L8G142	ush1g	A0A1L8G142	A0A1L8EMS3	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.505
A0A1L8G634	A0A1L8EUD3	A0A1L8G634	A0A1L8EUD3	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.505
A0A1L8G634	A0A1L8G8W8	A0A1L8G634	A0A1L8G8W8	Uncharacterized protein.	Lebercilin domain-containing protein.	0.563
A0A1L8G634	A0A1L8GED0	A0A1L8G634	A0A1L8GED0	Uncharacterized protein.	Uncharacterized protein.	0.557
A0A1L8G634	A0A1L8GI58	A0A1L8G634	A0A1L8GI58	Uncharacterized protein.	Uncharacterized protein.	0.557
A0A1L8G634	A0A1L8I1S8	A0A1L8G634	A0A1L8I1S8	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.571
A0A1L8G634	clrn1-2	A0A1L8G634	A0A1L8GAV9	Uncharacterized protein.	Uncharacterized protein.	0.566