(23 nodes) Positive regulation of mRNA splicing, via spliceosome network (Xenopus laevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A310TSG0	Uncharacterized protein. (113 aa)
	Tra2b.L	RRM domain-containing protein. (307 aa)
	A0A1L8EX85	RRM domain-containing protein. (292 aa)
	rbmx	RRM domain-containing protein. (370 aa)
	rbmx-2	RRM domain-containing protein. (365 aa)
	A0A1L8F9E3	SKIP_SNW domain-containing protein. (460 aa)
	A0A1L8FFG3	Uncharacterized protein. (504 aa)
	Tra2a.L	RRM domain-containing protein. (276 aa)
	Ncl.S	Uncharacterized protein. (705 aa)
	Thrap3.S	Uncharacterized protein. (652 aa)
	A0A1L8HBE3	Peptidase S59 domain-containing protein. (1742 aa)
	A0A1L8HE45	Uncharacterized protein. (906 aa)
	A0A1L8HJT4	Peptidase S59 domain-containing protein. (705 aa)
	dazap1	Uncharacterized protein. (405 aa)
	cirbp	RRM domain-containing protein. (166 aa)
	cirbp-2	RRM domain-containing protein. (166 aa)
	A0A1L8HWN1	Uncharacterized protein. (361 aa)
	A0A310TK71	Peptidase S59 domain-containing protein. (136 aa)
	A0A310TNY3	RRM domain-containing protein. (277 aa)
	snw1	MGC132028 protein. (535 aa)
	sf3b4	MGC82420 protein. (383 aa)
	sf3b4-2	Spx-prov protein. (377 aa)
	prpf19	Nmp200-prov protein. (504 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EX85	A0A1L8FFG3	A0A1L8EX85	A0A1L8FFG3	RRM domain-containing protein.	Uncharacterized protein.	0.516
A0A1L8EX85	A0A1L8HWN1	A0A1L8EX85	A0A1L8HWN1	RRM domain-containing protein.	Uncharacterized protein.	0.508
A0A1L8EX85	A0A310TNY3	A0A1L8EX85	A0A310TNY3	RRM domain-containing protein.	RRM domain-containing protein.	0.691
A0A1L8EX85	Ncl.S	A0A1L8EX85	A0A1L8G3W7	RRM domain-containing protein.	Uncharacterized protein.	0.493
A0A1L8EX85	Tra2a.L	A0A1L8EX85	A0A1L8FVX4	RRM domain-containing protein.	RRM domain-containing protein.	0.691
A0A1L8EX85	cirbp	A0A1L8EX85	A0A1L8HN75	RRM domain-containing protein.	RRM domain-containing protein.	0.504
A0A1L8EX85	cirbp-2	A0A1L8EX85	A0A1L8HWM7	RRM domain-containing protein.	RRM domain-containing protein.	0.506
A0A1L8EX85	dazap1	A0A1L8EX85	A0A1L8HN59	RRM domain-containing protein.	Uncharacterized protein.	0.471
A0A1L8EX85	prpf19	A0A1L8EX85	Q7ZXW4	RRM domain-containing protein.	Nmp200-prov protein.	0.516
A0A1L8EX85	rbmx	A0A1L8EX85	A0A1L8F3C0	RRM domain-containing protein.	RRM domain-containing protein.	0.790
A0A1L8EX85	rbmx-2	A0A1L8EX85	A0A1L8F813	RRM domain-containing protein.	RRM domain-containing protein.	0.791
A0A1L8EX85	sf3b4	A0A1L8EX85	Q6AZR0	RRM domain-containing protein.	MGC82420 protein.	0.559
A0A1L8EX85	sf3b4-2	A0A1L8EX85	Q7ZX30	RRM domain-containing protein.	Spx-prov protein.	0.559
A0A1L8F9E3	A0A1L8FFG3	A0A1L8F9E3	A0A1L8FFG3	SKIP_SNW domain-containing protein.	Uncharacterized protein.	0.924
A0A1L8F9E3	prpf19	A0A1L8F9E3	Q7ZXW4	SKIP_SNW domain-containing protein.	Nmp200-prov protein.	0.924
A0A1L8F9E3	sf3b4	A0A1L8F9E3	Q6AZR0	SKIP_SNW domain-containing protein.	MGC82420 protein.	0.858
A0A1L8F9E3	sf3b4-2	A0A1L8F9E3	Q7ZX30	SKIP_SNW domain-containing protein.	Spx-prov protein.	0.858
A0A1L8FFG3	A0A1L8EX85	A0A1L8FFG3	A0A1L8EX85	Uncharacterized protein.	RRM domain-containing protein.	0.516
A0A1L8FFG3	A0A1L8F9E3	A0A1L8FFG3	A0A1L8F9E3	Uncharacterized protein.	SKIP_SNW domain-containing protein.	0.924
A0A1L8FFG3	A0A310TNY3	A0A1L8FFG3	A0A310TNY3	Uncharacterized protein.	RRM domain-containing protein.	0.430