(22 nodes) Retinoic acid receptor signaling pathway network (Xenopus laevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cyp26b1-2	Uncharacterized protein; Belongs to the cytochrome P450 family. (510 aa)
	A0A1L8EKM7	Uncharacterized protein. (464 aa)
	Rara.L	Uncharacterized protein. (461 aa)
	A0A1L8F189	Uncharacterized protein. (483 aa)
	rxra	Uncharacterized protein. (488 aa)
	rxrb	Uncharacterized protein. (459 aa)
	A0A1L8F9E3	SKIP_SNW domain-containing protein. (460 aa)
	A0A1L8FRE1	Uncharacterized protein. (447 aa)
	ptf1a	BHLH domain-containing protein. (270 aa)
	A0A1L8FW99	Uncharacterized protein. (52 aa)
	A0A1L8FWE1	Uncharacterized protein. (395 aa)
	Rxrg.L	Uncharacterized protein. (470 aa)
	Rarg.S	Uncharacterized protein. (442 aa)
	A0A1L8HAC0	Uncharacterized protein. (121 aa)
	A0A1L8HII8	Uncharacterized protein. (130 aa)
	A0A1L8HIJ2	Uncharacterized protein. (442 aa)
	cyp26b1	Uncharacterized protein; Belongs to the cytochrome P450 family. (510 aa)
	snw1	MGC132028 protein. (535 aa)
	MGC115510	MGC115510 protein. (471 aa)
	crkl	MGC84382 protein. (302 aa)
	rxrb-2	Rxrb protein. (449 aa)
	crkl-2	MGC81407 protein. (302 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EKM7	A0A1L8F189	A0A1L8EKM7	A0A1L8F189	Uncharacterized protein.	Uncharacterized protein.	0.629
A0A1L8EKM7	MGC115510	A0A1L8EKM7	Q4KLS2	Uncharacterized protein.	MGC115510 protein.	0.586
A0A1L8EKM7	Rxrg.L	A0A1L8EKM7	A0A1L8GNN8	Uncharacterized protein.	Uncharacterized protein.	0.607
A0A1L8EKM7	rxra	A0A1L8EKM7	A0A1L8F631	Uncharacterized protein.	Uncharacterized protein.	0.632
A0A1L8EKM7	rxrb	A0A1L8EKM7	A0A1L8F8A1	Uncharacterized protein.	Uncharacterized protein.	0.586
A0A1L8EKM7	rxrb-2	A0A1L8EKM7	Q6INZ0	Uncharacterized protein.	Rxrb protein.	0.586
A0A1L8F189	A0A1L8EKM7	A0A1L8F189	A0A1L8EKM7	Uncharacterized protein.	Uncharacterized protein.	0.629
A0A1L8F189	A0A1L8FRE1	A0A1L8F189	A0A1L8FRE1	Uncharacterized protein.	Uncharacterized protein.	0.632
A0A1L8F189	A0A1L8FW99	A0A1L8F189	A0A1L8FW99	Uncharacterized protein.	Uncharacterized protein.	0.586
A0A1L8F189	A0A1L8FWE1	A0A1L8F189	A0A1L8FWE1	Uncharacterized protein.	Uncharacterized protein.	0.586
A0A1L8F189	A0A1L8HAC0	A0A1L8F189	A0A1L8HAC0	Uncharacterized protein.	Uncharacterized protein.	0.586
A0A1L8F189	A0A1L8HII8	A0A1L8F189	A0A1L8HII8	Uncharacterized protein.	Uncharacterized protein.	0.586
A0A1L8F189	A0A1L8HIJ2	A0A1L8F189	A0A1L8HIJ2	Uncharacterized protein.	Uncharacterized protein.	0.586
A0A1L8F189	Rara.L	A0A1L8F189	A0A1L8ERT7	Uncharacterized protein.	Uncharacterized protein.	0.622
A0A1L8F189	Rarg.S	A0A1L8F189	A0A1L8HA68	Uncharacterized protein.	Uncharacterized protein.	0.586
A0A1L8FRE1	A0A1L8F189	A0A1L8FRE1	A0A1L8F189	Uncharacterized protein.	Uncharacterized protein.	0.632
A0A1L8FRE1	MGC115510	A0A1L8FRE1	Q4KLS2	Uncharacterized protein.	MGC115510 protein.	0.634
A0A1L8FRE1	Rxrg.L	A0A1L8FRE1	A0A1L8GNN8	Uncharacterized protein.	Uncharacterized protein.	0.605
A0A1L8FRE1	rxra	A0A1L8FRE1	A0A1L8F631	Uncharacterized protein.	Uncharacterized protein.	0.623
A0A1L8FRE1	rxrb	A0A1L8FRE1	A0A1L8F8A1	Uncharacterized protein.	Uncharacterized protein.	0.586