(10 nodes) Regulation of retinoic acid receptor signaling pathway network (Xenopus laevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L8F9E3	SKIP_SNW domain-containing protein. (460 aa)
	trim16	Uncharacterized protein. (563 aa)
	cyp26b1-2	Uncharacterized protein; Belongs to the cytochrome P450 family. (510 aa)
	cnot1-2	Uncharacterized protein. (2405 aa)
	cyp26b1	Uncharacterized protein; Belongs to the cytochrome P450 family. (510 aa)
	trim16-2	MGC84103 protein. (563 aa)
	snw1	MGC132028 protein. (535 aa)
	cnot1	Uncharacterized protein. (2387 aa)
	Dhrs3.L	Uncharacterized protein. (325 aa)
	A0A1L8FGC1	Uncharacterized protein. (302 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8FGC1	Dhrs3.L	A0A1L8FGC1	A0A1L8FMF1	Uncharacterized protein.	Uncharacterized protein.	0.900
Dhrs3.L	A0A1L8FGC1	A0A1L8FMF1	A0A1L8FGC1	Uncharacterized protein.	Uncharacterized protein.	0.900
Dhrs3.L	cyp26b1	A0A1L8FMF1	A0A1L8HKG6	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.639
Dhrs3.L	cyp26b1-2	A0A1L8FMF1	A0A1L8HSP0	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.639
cnot1	cnot1-2	A0A1L8GFC1	A0A1L8GLF8	Uncharacterized protein.	Uncharacterized protein.	0.900
cnot1-2	cnot1	A0A1L8GLF8	A0A1L8GFC1	Uncharacterized protein.	Uncharacterized protein.	0.900
cyp26b1	Dhrs3.L	A0A1L8HKG6	A0A1L8FMF1	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.639
cyp26b1-2	Dhrs3.L	A0A1L8HSP0	A0A1L8FMF1	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.639