STRINGSTRING
tgfb1-2 tgfb1-2 hoxa5 hoxa5 tcf21 tcf21 hoxa5-2 hoxa5-2 itgb6 itgb6 tgfb1 tgfb1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tgfb1-2Transforming growth factor beta; Belongs to the TGF-beta family. (382 aa)
hoxa5Homeobox domain-containing protein. (272 aa)
tcf21BHLH domain-containing protein. (179 aa)
hoxa5-2Homeobox domain-containing protein. (273 aa)
itgb6Integrin beta; Belongs to the integrin beta chain family. (780 aa)
tgfb1Transforming growth factor beta; Belongs to the TGF-beta family. (382 aa)
Your Current Organism:
Xenopus laevis
NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna
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