4 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nabp2	OB domain-containing protein. (203 aa)
	nabp2-2	OB domain-containing protein. (203 aa)
	A0A1L8F537	Uncharacterized protein. (965 aa)
	ints3	Uncharacterized protein. (1018 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8F537	nabp2	A0A1L8F537	A0A1L8H9L5	Uncharacterized protein.	OB domain-containing protein.	0.932
A0A1L8F537	nabp2-2	A0A1L8F537	A0A1L8HHU4	Uncharacterized protein.	OB domain-containing protein.	0.932
ints3	nabp2	A0A1L8FD93	A0A1L8H9L5	Uncharacterized protein.	OB domain-containing protein.	0.932
ints3	nabp2-2	A0A1L8FD93	A0A1L8HHU4	Uncharacterized protein.	OB domain-containing protein.	0.932
nabp2	A0A1L8F537	A0A1L8H9L5	A0A1L8F537	OB domain-containing protein.	Uncharacterized protein.	0.932
nabp2	ints3	A0A1L8H9L5	A0A1L8FD93	OB domain-containing protein.	Uncharacterized protein.	0.932
nabp2-2	A0A1L8F537	A0A1L8HHU4	A0A1L8F537	OB domain-containing protein.	Uncharacterized protein.	0.932
nabp2-2	ints3	A0A1L8HHU4	A0A1L8FD93	OB domain-containing protein.	Uncharacterized protein.	0.932