26 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	col4a3bp-2	Uncharacterized protein. (617 aa)
	Pltp.S	Uncharacterized protein. (497 aa)
	plekha3	PH domain-containing protein. (297 aa)
	pltp	Uncharacterized protein. (497 aa)
	plekha3-2	PH domain-containing protein. (297 aa)
	clip3	Uncharacterized protein. (534 aa)
	A0A1L8F919	Uncharacterized protein. (534 aa)
	Psap.S	Uncharacterized protein. (512 aa)
	A0A1L8FHW0	Uncharacterized protein. (480 aa)
	Psap.L	Uncharacterized protein. (518 aa)
	cptp	GLTP domain-containing protein. (215 aa)
	Mag.L	Uncharacterized protein. (625 aa)
	A0A1L8FTJ9	Uncharacterized protein. (225 aa)
	plekha8	PH domain-containing protein. (547 aa)
	epdr1	Uncharacterized protein. (220 aa)
	Laptm4b.L	Uncharacterized protein. (239 aa)
	cln8	TLC domain-containing protein. (285 aa)
	pla2g4a	Phospholipase A2. (749 aa)
	gltpd2	GLTP domain-containing protein. (298 aa)
	A0A1L8HIG0	PH domain-containing protein. (259 aa)
	A0A1L8HQ03	GLTP domain-containing protein. (257 aa)
	Rtn4r.S	Uncharacterized protein. (494 aa)
	col4a3bp	Uncharacterized protein. (617 aa)
	gltp	GLTP domain-containing protein. (209 aa)
	Rtn4r.L	Uncharacterized protein. (494 aa)
	cln8-2	MGC83128 protein. (290 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8FHW0	Rtn4r.L	A0A1L8FHW0	A0A1L8I065	Uncharacterized protein.	Uncharacterized protein.	0.607
A0A1L8FHW0	Rtn4r.S	A0A1L8FHW0	A0A1L8HQ46	Uncharacterized protein.	Uncharacterized protein.	0.607
A0A1L8HQ03	plekha3	A0A1L8HQ03	A0A1L8EPL1	GLTP domain-containing protein.	PH domain-containing protein.	0.449
A0A1L8HQ03	plekha3-2	A0A1L8HQ03	A0A1L8EWE2	GLTP domain-containing protein.	PH domain-containing protein.	0.449
Mag.L	Rtn4r.L	A0A1L8FPS9	A0A1L8I065	Uncharacterized protein.	Uncharacterized protein.	0.607
Mag.L	Rtn4r.S	A0A1L8FPS9	A0A1L8HQ46	Uncharacterized protein.	Uncharacterized protein.	0.607
Pltp.S	pltp	A0A1L8EMG5	A0A1L8ETW4	Uncharacterized protein.	Uncharacterized protein.	0.900
Psap.L	Psap.S	A0A1L8FK30	A0A1L8FF90	Uncharacterized protein.	Uncharacterized protein.	0.900
Psap.S	Psap.L	A0A1L8FF90	A0A1L8FK30	Uncharacterized protein.	Uncharacterized protein.	0.900
Rtn4r.L	A0A1L8FHW0	A0A1L8I065	A0A1L8FHW0	Uncharacterized protein.	Uncharacterized protein.	0.607
Rtn4r.L	Mag.L	A0A1L8I065	A0A1L8FPS9	Uncharacterized protein.	Uncharacterized protein.	0.607
Rtn4r.S	A0A1L8FHW0	A0A1L8HQ46	A0A1L8FHW0	Uncharacterized protein.	Uncharacterized protein.	0.607
Rtn4r.S	Mag.L	A0A1L8HQ46	A0A1L8FPS9	Uncharacterized protein.	Uncharacterized protein.	0.607
gltp	plekha3	A0A1L8HZZ2	A0A1L8EPL1	GLTP domain-containing protein.	PH domain-containing protein.	0.449
gltp	plekha3-2	A0A1L8HZZ2	A0A1L8EWE2	GLTP domain-containing protein.	PH domain-containing protein.	0.449
plekha3	A0A1L8HQ03	A0A1L8EPL1	A0A1L8HQ03	PH domain-containing protein.	GLTP domain-containing protein.	0.449
plekha3	gltp	A0A1L8EPL1	A0A1L8HZZ2	PH domain-containing protein.	GLTP domain-containing protein.	0.449
plekha3-2	A0A1L8HQ03	A0A1L8EWE2	A0A1L8HQ03	PH domain-containing protein.	GLTP domain-containing protein.	0.449
plekha3-2	gltp	A0A1L8EWE2	A0A1L8HZZ2	PH domain-containing protein.	GLTP domain-containing protein.	0.449
pltp	Pltp.S	A0A1L8ETW4	A0A1L8EMG5	Uncharacterized protein.	Uncharacterized protein.	0.900