(32 nodes) Regulation of protein localization to cell surface network (Xenopus laevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ctnnb1-2	Ctnnb1-prov protein. (781 aa)
	Tm9sf4.L	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (665 aa)
	wdr20	WD_REPEATS_REGION domain-containing protein. (586 aa)
	A0A1L8F244	Uncharacterized protein. (120 aa)
	A0A1L8F271	Uncharacterized protein. (169 aa)
	tnf	TNF_2 domain-containing protein. (227 aa)
	tnf-2	Tumor necrosis factor alpha. (225 aa)
	Arf6.S	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (215 aa)
	tmem35a	Uncharacterized protein. (162 aa)
	A0A1L8F6U3	Uncharacterized protein. (169 aa)
	A0A1L8F6U7	Uncharacterized protein. (164 aa)
	lta-2	TNF_2 domain-containing protein. (208 aa)
	A0A1L8F921	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (175 aa)
	A0A1L8F9Y0	WD_REPEATS_REGION domain-containing protein. (574 aa)
	gbf1	SEC7 domain-containing protein. (1850 aa)
	Gbf1.L	SEC7 domain-containing protein. (1846 aa)
	A0A1L8G0J9	COMMD1_N domain-containing protein. (77 aa)
	gopc	PDZ domain-containing protein. (442 aa)
	commd1	COMM domain-containing protein. (186 aa)
	gopc-2	PDZ domain-containing protein. (440 aa)
	Ric3.S	RIC3 domain-containing protein. (371 aa)
	A0A1L8GIB1	Uncharacterized protein. (204 aa)
	rangrf	Uncharacterized protein. (259 aa)
	A0A1L8HD34	PDZ domain-containing protein. (145 aa)
	lrig2	Uncharacterized protein. (1075 aa)
	A0A1L8HKA9	Uncharacterized protein. (170 aa)
	rab11fip5	Uncharacterized protein. (1452 aa)
	tm9sf4	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (720 aa)
	Arf6	Arf6 protein; Belongs to the small GTPase superfamily. Arf family. (175 aa)
	ctnnb1	Beta-catenin protein. (781 aa)
	arf6.2	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family. (175 aa)
	tax1bp3	Tax1-binding protein 3; May regulate a number of protein-protein interactions by competing for PDZ domain binding sites. (124 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8F244	A0A1L8F271	A0A1L8F244	A0A1L8F271	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A1L8F244	A0A1L8F6U3	A0A1L8F244	A0A1L8F6U3	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A1L8F271	A0A1L8F244	A0A1L8F271	A0A1L8F244	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A1L8F271	A0A1L8F6U7	A0A1L8F271	A0A1L8F6U7	Uncharacterized protein.	Uncharacterized protein.	0.529
A0A1L8F6U3	A0A1L8F244	A0A1L8F6U3	A0A1L8F244	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A1L8F6U3	A0A1L8F6U7	A0A1L8F6U3	A0A1L8F6U7	Uncharacterized protein.	Uncharacterized protein.	0.529
A0A1L8F6U7	A0A1L8F271	A0A1L8F6U7	A0A1L8F271	Uncharacterized protein.	Uncharacterized protein.	0.529
A0A1L8F6U7	A0A1L8F6U3	A0A1L8F6U7	A0A1L8F6U3	Uncharacterized protein.	Uncharacterized protein.	0.529
A0A1L8F921	Gbf1.L	A0A1L8F921	A0A1L8FJX2	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	SEC7 domain-containing protein.	0.555
A0A1L8F921	gbf1	A0A1L8F921	A0A1L8FF50	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	SEC7 domain-containing protein.	0.555
A0A1L8HD34	ctnnb1	A0A1L8HD34	Q63ZT4	PDZ domain-containing protein.	Beta-catenin protein.	0.634
A0A1L8HD34	ctnnb1-2	A0A1L8HD34	Q7ZX35	PDZ domain-containing protein.	Ctnnb1-prov protein.	0.634
Arf6	Gbf1.L	Q5EAX8	A0A1L8FJX2	Arf6 protein; Belongs to the small GTPase superfamily. Arf family.	SEC7 domain-containing protein.	0.555
Arf6	gbf1	Q5EAX8	A0A1L8FF50	Arf6 protein; Belongs to the small GTPase superfamily. Arf family.	SEC7 domain-containing protein.	0.555
Arf6.S	Gbf1.L	A0A1L8F420	A0A1L8FJX2	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	SEC7 domain-containing protein.	0.555
Arf6.S	gbf1	A0A1L8F420	A0A1L8FF50	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	SEC7 domain-containing protein.	0.555
Gbf1.L	A0A1L8F921	A0A1L8FJX2	A0A1L8F921	SEC7 domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.555
Gbf1.L	Arf6	A0A1L8FJX2	Q5EAX8	SEC7 domain-containing protein.	Arf6 protein; Belongs to the small GTPase superfamily. Arf family.	0.555
Gbf1.L	Arf6.S	A0A1L8FJX2	A0A1L8F420	SEC7 domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.555
Gbf1.L	arf6.2	A0A1L8FJX2	Q6DE46	SEC7 domain-containing protein.	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	0.555