(32 nodes) Regulation of establishment of cell polarity network (Xenopus laevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Bcas3.L	BCAS3 domain-containing protein. (812 aa)
	ankfn1l	Uncharacterized protein. (1291 aa)
	A0A1L8ETU8	Uncharacterized protein. (1073 aa)
	A0A1L8EY92	Uncharacterized protein. (1197 aa)
	abl1	Tyrosine-protein kinase. (1122 aa)
	rack1	WD_REPEATS_REGION domain-containing protein. (276 aa)
	A0A1L8F475	Uncharacterized protein. (1350 aa)
	A0A1L8F6E0	WD_REPEATS_REGION domain-containing protein. (165 aa)
	A0A1L8FAW9	Uncharacterized protein. (1447 aa)
	A0A1L8FI84	Uncharacterized protein. (215 aa)
	Fam65b.S	PL48 domain-containing protein. (1064 aa)
	A0A1L8FT76	SEC7 domain-containing protein. (1856 aa)
	A0A1L8FTU6	Uncharacterized protein. (324 aa)
	krit1	Uncharacterized protein. (743 aa)
	ripor2	PL48 domain-containing protein. (1007 aa)
	A0A1L8FZ76	Uncharacterized protein. (404 aa)
	A0A1L8FZ82	SEC7 domain-containing protein. (1771 aa)
	wdpcp	Uncharacterized protein. (708 aa)
	cdh5	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (774 aa)
	abl2	Tyrosine-protein kinase. (1102 aa)
	cdh5-2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (775 aa)
	Abl2.L	Tyrosine-protein kinase. (1102 aa)
	Gata3.L	Uncharacterized protein. (454 aa)
	A0A1L8HHR6	Uncharacterized protein. (174 aa)
	A0A1L8HMD0	Uncharacterized protein. (720 aa)
	Rictor.S	Uncharacterized protein. (1651 aa)
	rufy3	Uncharacterized protein. (732 aa)
	dock8	Uncharacterized protein; Belongs to the DOCK family. (2056 aa)
	A0A1L8I2M9	Uncharacterized protein. (1623 aa)
	gata3	XGATA-3 protein. (435 aa)
	fam49b	Cg32066-prov protein. (324 aa)
	rack1-2	Gnb2l1-prov protein. (317 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8I2M9	Rictor.S	A0A1L8I2M9	A0A1L8HRQ4	Uncharacterized protein.	Uncharacterized protein.	0.900
Abl2.L	abl1	A0A1L8GML3	A0A1L8F1E7	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.907
Abl2.L	abl2	A0A1L8GML3	A0A1L8GGA5	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.900
Rictor.S	A0A1L8I2M9	A0A1L8HRQ4	A0A1L8I2M9	Uncharacterized protein.	Uncharacterized protein.	0.900
abl1	Abl2.L	A0A1L8F1E7	A0A1L8GML3	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.907
abl1	abl2	A0A1L8F1E7	A0A1L8GGA5	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.907
abl1	rack1	A0A1L8F1E7	A0A1L8F3K2	Tyrosine-protein kinase.	WD_REPEATS_REGION domain-containing protein.	0.473
abl1	rack1-2	A0A1L8F1E7	Q8AVP6	Tyrosine-protein kinase.	Gnb2l1-prov protein.	0.473
abl2	Abl2.L	A0A1L8GGA5	A0A1L8GML3	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.900
abl2	abl1	A0A1L8GGA5	A0A1L8F1E7	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.907
cdh5	cdh5-2	A0A1L8GEW5	A0A1L8GKR1	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.900
cdh5	krit1	A0A1L8GEW5	A0A1L8FVP5	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.476
cdh5-2	cdh5	A0A1L8GKR1	A0A1L8GEW5	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.900
cdh5-2	krit1	A0A1L8GKR1	A0A1L8FVP5	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.476
krit1	cdh5	A0A1L8FVP5	A0A1L8GEW5	Uncharacterized protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.476
krit1	cdh5-2	A0A1L8FVP5	A0A1L8GKR1	Uncharacterized protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.476
rack1	abl1	A0A1L8F3K2	A0A1L8F1E7	WD_REPEATS_REGION domain-containing protein.	Tyrosine-protein kinase.	0.473
rack1-2	abl1	Q8AVP6	A0A1L8F1E7	Gnb2l1-prov protein.	Tyrosine-protein kinase.	0.473