36 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fgb-2	Fibrinogen B-beta subunit. (488 aa)
	Serpine1.L	SERPIN domain-containing protein; Belongs to the serpin family. (403 aa)
	cdh5	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (774 aa)
	scg2	Uncharacterized protein. (611 aa)
	Scg2.S	Uncharacterized protein. (621 aa)
	Tnfaip3.S	Uncharacterized protein. (781 aa)
	krit1	Uncharacterized protein. (743 aa)
	A0A1L8FNK1	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (209 aa)
	A0A1L8FHA4	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (210 aa)
	abl2	Tyrosine-protein kinase. (1102 aa)
	cdh5-2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (775 aa)
	Abl2.L	Tyrosine-protein kinase. (1102 aa)
	braf	Uncharacterized protein. (802 aa)
	ndnfl1	Uncharacterized protein. (544 aa)
	ndnfl1.1	Uncharacterized protein. (545 aa)
	Gata3.L	Uncharacterized protein. (454 aa)
	abl1	Tyrosine-protein kinase. (1122 aa)
	il10	Uncharacterized protein. (172 aa)
	il10-2	Uncharacterized protein. (170 aa)
	gas6	Uncharacterized protein. (668 aa)
	kdr	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1326 aa)
	fgb	Fibrinogen C-terminal domain-containing protein. (495 aa)
	A0A1L8HLM6	Fibrinogen C-terminal domain-containing protein. (438 aa)
	ndnf	Uncharacterized protein. (570 aa)
	angptl4	Fibrinogen C-terminal domain-containing protein. (452 aa)
	tek	Uncharacterized protein. (1126 aa)
	A0A1L8HTZ2	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1338 aa)
	A0A1L8HU91	Fibrinogen C-terminal domain-containing protein. (403 aa)
	Ndnf.L	Uncharacterized protein. (569 aa)
	angptl4-2	Fibrinogen C-terminal domain-containing protein. (453 aa)
	A0A1L8HYK8	Uncharacterized protein. (1009 aa)
	gata3	XGATA-3 protein. (435 aa)
	nfe2l2	MGC53355 protein. (591 aa)
	gas6-2	Gas6-prov protein. (669 aa)
	Nfe2l2.S	BZIP domain-containing protein; Belongs to the bZIP family. (590 aa)
	A0A1L8EMD1	Uncharacterized protein. (162 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8FHA4	A0A1L8HTZ2	A0A1L8FHA4	A0A1L8HTZ2	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.752
A0A1L8FHA4	A0A1L8HYK8	A0A1L8FHA4	A0A1L8HYK8	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Uncharacterized protein.	0.757
A0A1L8FHA4	kdr	A0A1L8FHA4	A0A1L8HLA0	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.752
A0A1L8FHA4	tek	A0A1L8FHA4	A0A1L8HP14	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Uncharacterized protein.	0.757
A0A1L8FNK1	A0A1L8HTZ2	A0A1L8FNK1	A0A1L8HTZ2	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.752
A0A1L8FNK1	A0A1L8HYK8	A0A1L8FNK1	A0A1L8HYK8	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Uncharacterized protein.	0.757
A0A1L8FNK1	kdr	A0A1L8FNK1	A0A1L8HLA0	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.752
A0A1L8FNK1	tek	A0A1L8FNK1	A0A1L8HP14	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Uncharacterized protein.	0.757
A0A1L8HLM6	fgb	A0A1L8HLM6	A0A1L8HLM3	Fibrinogen C-terminal domain-containing protein.	Fibrinogen C-terminal domain-containing protein.	0.998
A0A1L8HLM6	fgb-2	A0A1L8HLM6	Q91589	Fibrinogen C-terminal domain-containing protein.	Fibrinogen B-beta subunit.	0.998
A0A1L8HTZ2	A0A1L8FHA4	A0A1L8HTZ2	A0A1L8FHA4	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.752
A0A1L8HTZ2	A0A1L8FNK1	A0A1L8HTZ2	A0A1L8FNK1	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.752
A0A1L8HTZ2	cdh5	A0A1L8HTZ2	A0A1L8GEW5	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.583
A0A1L8HTZ2	cdh5-2	A0A1L8HTZ2	A0A1L8GKR1	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.583
A0A1L8HTZ2	kdr	A0A1L8HTZ2	A0A1L8HLA0	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.900
A0A1L8HU91	fgb	A0A1L8HU91	A0A1L8HLM3	Fibrinogen C-terminal domain-containing protein.	Fibrinogen C-terminal domain-containing protein.	0.997
A0A1L8HU91	fgb-2	A0A1L8HU91	Q91589	Fibrinogen C-terminal domain-containing protein.	Fibrinogen B-beta subunit.	0.997
A0A1L8HYK8	A0A1L8FHA4	A0A1L8HYK8	A0A1L8FHA4	Uncharacterized protein.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.757
A0A1L8HYK8	A0A1L8FNK1	A0A1L8HYK8	A0A1L8FNK1	Uncharacterized protein.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.757
Abl2.L	abl1	A0A1L8GML3	A0A1L8F1E7	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.907