41 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	arfip1	AH domain-containing protein. (396 aa)
	tepsin	ENTH domain-containing protein. (561 aa)
	A0A1L8EMN6	ZnMc domain-containing protein. (603 aa)
	Llgl1.S	WD_REPEATS_REGION domain-containing protein. (999 aa)
	A0A1L8EU78	ZnMc domain-containing protein. (603 aa)
	A0A1L8EYQ3	LLGL domain-containing protein. (1049 aa)
	atp7a	Uncharacterized protein. (1503 aa)
	Pqlc1.1.L	Uncharacterized protein. (253 aa)
	rab31	Uncharacterized protein. (194 aa)
	impad1	Uncharacterized protein. (351 aa)
	A0A1L8FY83	Uncharacterized protein. (268 aa)
	A0A1L8FYH6	Uncharacterized protein. (155 aa)
	impad1-2	Uncharacterized protein. (356 aa)
	vps13b	Uncharacterized protein. (4031 aa)
	Slc30a6.S	Uncharacterized protein. (462 aa)
	slc30a6	Uncharacterized protein. (407 aa)
	A0A1L8GKX6	Uncharacterized protein. (238 aa)
	ndst1	Uncharacterized protein. (878 aa)
	A0A1L8HUW3	Uncharacterized protein. (873 aa)
	sys1	Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family. (156 aa)
	scamp2-2	Secretory carrier-associated membrane protein. (327 aa)
	MGC83291	Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family. (156 aa)
	cabp7-2	Uncharacterized protein. (215 aa)
	A0A1L8HV23	Uncharacterized protein. (873 aa)
	scamp2	Secretory carrier-associated membrane protein. (331 aa)
	A0A1L8GWS5	Uncharacterized protein. (878 aa)
	Caln1.S	Uncharacterized protein. (224 aa)
	Atp7b.S	Uncharacterized protein. (1503 aa)
	A0A1L8HBV4	Uncharacterized protein. (80 aa)
	A0A1L8HG92	Uncharacterized protein. (225 aa)
	Atp7b.L	Uncharacterized protein. (1546 aa)
	A0A1L8HJN3	AH domain-containing protein. (392 aa)
	nsg1	Uncharacterized protein. (185 aa)
	tmem165	GDT1 family protein. (254 aa)
	A0A1L8HLM0	RING-CH-type domain-containing protein. (269 aa)
	A0A1L8HLT7	AH domain-containing protein. (341 aa)
	A0A1L8HM02	Uncharacterized protein. (873 aa)
	A0A1L8HM50	Uncharacterized protein. (811 aa)
	cabp7	Uncharacterized protein. (215 aa)
	nsg1-2	Uncharacterized protein. (185 aa)
	Tmem165.L	GDT1 family protein. (254 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atp7b.L	Slc30a6.S	A0A1L8HIS5	A0A1L8G1V7	Uncharacterized protein.	Uncharacterized protein.	0.414
Atp7b.L	slc30a6	A0A1L8HIS5	A0A1L8G844	Uncharacterized protein.	Uncharacterized protein.	0.414
Atp7b.S	Slc30a6.S	A0A1L8HAD8	A0A1L8G1V7	Uncharacterized protein.	Uncharacterized protein.	0.414
Atp7b.S	slc30a6	A0A1L8HAD8	A0A1L8G844	Uncharacterized protein.	Uncharacterized protein.	0.414
Slc30a6.S	Atp7b.L	A0A1L8G1V7	A0A1L8HIS5	Uncharacterized protein.	Uncharacterized protein.	0.414
Slc30a6.S	Atp7b.S	A0A1L8G1V7	A0A1L8HAD8	Uncharacterized protein.	Uncharacterized protein.	0.414
Slc30a6.S	atp7a	A0A1L8G1V7	A0A1L8F733	Uncharacterized protein.	Uncharacterized protein.	0.414
Tmem165.L	impad1	A0A1L8HTR8	A0A1L8FT60	GDT1 family protein.	Uncharacterized protein.	0.825
Tmem165.L	impad1-2	A0A1L8HTR8	A0A1L8FZ44	GDT1 family protein.	Uncharacterized protein.	0.825
atp7a	Slc30a6.S	A0A1L8F733	A0A1L8G1V7	Uncharacterized protein.	Uncharacterized protein.	0.414
atp7a	slc30a6	A0A1L8F733	A0A1L8G844	Uncharacterized protein.	Uncharacterized protein.	0.414
impad1	Tmem165.L	A0A1L8FT60	A0A1L8HTR8	Uncharacterized protein.	GDT1 family protein.	0.825
impad1	impad1-2	A0A1L8FT60	A0A1L8FZ44	Uncharacterized protein.	Uncharacterized protein.	0.900
impad1	tmem165	A0A1L8FT60	A0A1L8HL78	Uncharacterized protein.	GDT1 family protein.	0.825
impad1-2	Tmem165.L	A0A1L8FZ44	A0A1L8HTR8	Uncharacterized protein.	GDT1 family protein.	0.825
impad1-2	impad1	A0A1L8FZ44	A0A1L8FT60	Uncharacterized protein.	Uncharacterized protein.	0.900
impad1-2	tmem165	A0A1L8FZ44	A0A1L8HL78	Uncharacterized protein.	GDT1 family protein.	0.825
slc30a6	Atp7b.L	A0A1L8G844	A0A1L8HIS5	Uncharacterized protein.	Uncharacterized protein.	0.414
slc30a6	Atp7b.S	A0A1L8G844	A0A1L8HAD8	Uncharacterized protein.	Uncharacterized protein.	0.414
slc30a6	atp7a	A0A1L8G844	A0A1L8F733	Uncharacterized protein.	Uncharacterized protein.	0.414