19 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nudcd2	LOC496162 protein. (157 aa)
	trim45	Uncharacterized protein. (548 aa)
	A0A1L8HAN2	Uncharacterized protein. (1302 aa)
	A0A1L8H685	Uncharacterized protein. (394 aa)
	cyth4	Uncharacterized protein. (415 aa)
	usb1	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (251 aa)
	A0A1L8G903	Uncharacterized protein. (178 aa)
	kcnv1	BTB domain-containing protein; Belongs to the potassium channel family. (507 aa)
	cep55	EABR domain-containing protein. (349 aa)
	rbm18	RRM domain-containing protein. (190 aa)
	A0A1L8F205	RRM domain-containing protein. (190 aa)
	A0A1L8EYZ7	Uncharacterized protein. (201 aa)
	A0A1L8EXI0	RRM domain-containing protein. (1203 aa)
	A0A1L8ER89	Uncharacterized protein. (201 aa)
	A0A1L8HG24	Uncharacterized protein. (1144 aa)
	A0A1L8HJ04	Uncharacterized protein. (920 aa)
	A0A1L8HJ44	Uncharacterized protein. (346 aa)
	rab35l	Uncharacterized protein. (201 aa)
	A0A1L8HDY2	Uncharacterized protein. (392 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8ER89	A0A1L8EYZ7	A0A1L8ER89	A0A1L8EYZ7	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8ER89	rab35l	A0A1L8ER89	A0A1L8I076	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A1L8EXI0	cep55	A0A1L8EXI0	A0A1L8FJJ4	RRM domain-containing protein.	EABR domain-containing protein.	0.436
A0A1L8EYZ7	A0A1L8ER89	A0A1L8EYZ7	A0A1L8ER89	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8EYZ7	rab35l	A0A1L8EYZ7	A0A1L8I076	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A1L8H685	A0A1L8HDY2	A0A1L8H685	A0A1L8HDY2	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A1L8HDY2	A0A1L8H685	A0A1L8HDY2	A0A1L8H685	Uncharacterized protein.	Uncharacterized protein.	0.901
cep55	A0A1L8EXI0	A0A1L8FJJ4	A0A1L8EXI0	EABR domain-containing protein.	RRM domain-containing protein.	0.436
rab35l	A0A1L8ER89	A0A1L8I076	A0A1L8ER89	Uncharacterized protein.	Uncharacterized protein.	0.901
rab35l	A0A1L8EYZ7	A0A1L8I076	A0A1L8EYZ7	Uncharacterized protein.	Uncharacterized protein.	0.901