9 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sec61g	Uncharacterized protein. (68 aa)
	ssr4	Uncharacterized protein. (170 aa)
	A0A1L8F1U4	Uncharacterized protein. (166 aa)
	Arl6ip1.L	Uncharacterized protein. (203 aa)
	rps15a	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family. (175 aa)
	sec61a1	Plug_translocon domain-containing protein. (476 aa)
	arl6ip1	MGC84453 protein. (203 aa)
	sec61a1-2	Sec61a1 protein. (476 aa)
	sec61b	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum. (96 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8F1U4	sec61a1	A0A1L8F1U4	A0A1L8GPS0	Uncharacterized protein.	Plug_translocon domain-containing protein.	0.695
A0A1L8F1U4	sec61a1-2	A0A1L8F1U4	Q7ZX87	Uncharacterized protein.	Sec61a1 protein.	0.695
A0A1L8F1U4	sec61b	A0A1L8F1U4	Q8AVT7	Uncharacterized protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.975
A0A1L8F1U4	sec61g	A0A1L8F1U4	A0A1L8FWK5	Uncharacterized protein.	Uncharacterized protein.	0.882
Arl6ip1.L	sec61a1	A0A1L8EXN3	A0A1L8GPS0	Uncharacterized protein.	Plug_translocon domain-containing protein.	0.974
Arl6ip1.L	sec61a1-2	A0A1L8EXN3	Q7ZX87	Uncharacterized protein.	Sec61a1 protein.	0.974
Arl6ip1.L	sec61b	A0A1L8EXN3	Q8AVT7	Uncharacterized protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.757
Arl6ip1.L	sec61g	A0A1L8EXN3	A0A1L8FWK5	Uncharacterized protein.	Uncharacterized protein.	0.650
arl6ip1	sec61a1	Q642Q4	A0A1L8GPS0	MGC84453 protein.	Plug_translocon domain-containing protein.	0.974
arl6ip1	sec61a1-2	Q642Q4	Q7ZX87	MGC84453 protein.	Sec61a1 protein.	0.974
arl6ip1	sec61b	Q642Q4	Q8AVT7	MGC84453 protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.757
arl6ip1	sec61g	Q642Q4	A0A1L8FWK5	MGC84453 protein.	Uncharacterized protein.	0.651
rps15a	sec61a1	A0A1L8EQ61	A0A1L8GPS0	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	Plug_translocon domain-containing protein.	0.974
rps15a	sec61a1-2	A0A1L8EQ61	Q7ZX87	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	Sec61a1 protein.	0.974
rps15a	sec61b	A0A1L8EQ61	Q8AVT7	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.757
rps15a	sec61g	A0A1L8EQ61	A0A1L8FWK5	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	Uncharacterized protein.	0.650
sec61a1	A0A1L8F1U4	A0A1L8GPS0	A0A1L8F1U4	Plug_translocon domain-containing protein.	Uncharacterized protein.	0.695
sec61a1	Arl6ip1.L	A0A1L8GPS0	A0A1L8EXN3	Plug_translocon domain-containing protein.	Uncharacterized protein.	0.974
sec61a1	arl6ip1	A0A1L8GPS0	Q642Q4	Plug_translocon domain-containing protein.	MGC84453 protein.	0.974
sec61a1	rps15a	A0A1L8GPS0	A0A1L8EQ61	Plug_translocon domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	0.974