13 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	clip4-2	Uncharacterized protein. (716 aa)
	A0A1L8F919	Uncharacterized protein. (534 aa)
	clip3	Uncharacterized protein. (534 aa)
	tbcb	MGC132396 protein. (246 aa)
	clip1	Uncharacterized protein. (2362 aa)
	A0A1L8I050	Uncharacterized protein; Belongs to the peptidase C19 family. (807 aa)
	A0A1L8HGK2	CAP-Gly domain-containing protein. (724 aa)
	clip2-2	Uncharacterized protein. (1004 aa)
	clip2	Uncharacterized protein. (1004 aa)
	cep350-2	CAP-Gly domain-containing protein. (2630 aa)
	cyld	Uncharacterized protein. (973 aa)
	cep350	CAP-Gly domain-containing protein. (2631 aa)
	clip4	Uncharacterized protein. (659 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8F919	A0A1L8I050	A0A1L8F919	A0A1L8I050	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.502
A0A1L8F919	cyld	A0A1L8F919	A0A1L8GKP3	Uncharacterized protein.	Uncharacterized protein.	0.602
A0A1L8I050	A0A1L8F919	A0A1L8I050	A0A1L8F919	Uncharacterized protein; Belongs to the peptidase C19 family.	Uncharacterized protein.	0.502
A0A1L8I050	cep350	A0A1L8I050	A0A1L8GG44	Uncharacterized protein; Belongs to the peptidase C19 family.	CAP-Gly domain-containing protein.	0.463
A0A1L8I050	cep350-2	A0A1L8I050	A0A1L8GMU3	Uncharacterized protein; Belongs to the peptidase C19 family.	CAP-Gly domain-containing protein.	0.463
A0A1L8I050	clip3	A0A1L8I050	A0A1L8F405	Uncharacterized protein; Belongs to the peptidase C19 family.	Uncharacterized protein.	0.502
A0A1L8I050	clip4	A0A1L8I050	A0A1L8G131	Uncharacterized protein; Belongs to the peptidase C19 family.	Uncharacterized protein.	0.502
A0A1L8I050	clip4-2	A0A1L8I050	A0A1L8G6B5	Uncharacterized protein; Belongs to the peptidase C19 family.	Uncharacterized protein.	0.502
cep350	A0A1L8I050	A0A1L8GG44	A0A1L8I050	CAP-Gly domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.463
cep350	cyld	A0A1L8GG44	A0A1L8GKP3	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.476
cep350-2	A0A1L8I050	A0A1L8GMU3	A0A1L8I050	CAP-Gly domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.463
cep350-2	cyld	A0A1L8GMU3	A0A1L8GKP3	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.476
clip2	cyld	A0A1L8H8B5	A0A1L8GKP3	Uncharacterized protein.	Uncharacterized protein.	0.449
clip2-2	cyld	A0A1L8HGB8	A0A1L8GKP3	Uncharacterized protein.	Uncharacterized protein.	0.449
clip3	A0A1L8I050	A0A1L8F405	A0A1L8I050	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.502
clip3	cyld	A0A1L8F405	A0A1L8GKP3	Uncharacterized protein.	Uncharacterized protein.	0.733
clip4	A0A1L8I050	A0A1L8G131	A0A1L8I050	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.502
clip4	cyld	A0A1L8G131	A0A1L8GKP3	Uncharacterized protein.	Uncharacterized protein.	0.582
clip4-2	A0A1L8I050	A0A1L8G6B5	A0A1L8I050	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.502
clip4-2	cyld	A0A1L8G6B5	A0A1L8GKP3	Uncharacterized protein.	Uncharacterized protein.	0.582