26 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	jag2	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1223 aa)
	crb2	Uncharacterized protein. (1472 aa)
	A0A1L8F3M2	Uncharacterized protein. (280 aa)
	notch1	Uncharacterized protein. (2521 aa)
	jag2-2	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1227 aa)
	A0A1L8FTL4	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (2752 aa)
	A0A1L8FVN0	Uncharacterized protein. (3628 aa)
	dlk2	Uncharacterized protein. (418 aa)
	dll1	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (721 aa)
	dlk2-2	Uncharacterized protein. (413 aa)
	sned1	Uncharacterized protein. (1697 aa)
	A0A1L8GGU0	Uncharacterized protein. (2447 aa)
	A0A1L8GN74	Uncharacterized protein. (1390 aa)
	A0A1L8GSA8	Uncharacterized protein. (1053 aa)
	A0A1L8GSW8	Uncharacterized protein. (2869 aa)
	wif1	Uncharacterized protein. (374 aa)
	A0A1L8H0J8	Uncharacterized protein. (2883 aa)
	A0A1L8H163	Uncharacterized protein. (1053 aa)
	A0A1L8H2E9	Uncharacterized protein. (2404 aa)
	fbn3	Uncharacterized protein. (2864 aa)
	A0A1L8I1D3	Uncharacterized protein. (2898 aa)
	wif1-2	Wnt inhibitory factor-1. (374 aa)
	X-Delta-2	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (642 aa)
	dner-2	Dnera protein. (678 aa)
	egfl7	Egfl7 protein. (280 aa)
	dll1-2	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (721 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8GGU0	A0A1L8H2E9	A0A1L8GGU0	A0A1L8H2E9	Uncharacterized protein.	Uncharacterized protein.	0.444
A0A1L8GGU0	X-Delta-2	A0A1L8GGU0	P79941	Uncharacterized protein.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.884
A0A1L8GGU0	dll1	A0A1L8GGU0	A0A1L8G230	Uncharacterized protein.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.933
A0A1L8GGU0	dll1-2	A0A1L8GGU0	Q91902	Uncharacterized protein.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.934
A0A1L8GGU0	jag2	A0A1L8GGU0	A0A1L8EZY8	Uncharacterized protein.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.935
A0A1L8GGU0	jag2-2	A0A1L8GGU0	A0A1L8FA43	Uncharacterized protein.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.935
A0A1L8GGU0	notch1	A0A1L8GGU0	A0A1L8F627	Uncharacterized protein.	Uncharacterized protein.	0.553
A0A1L8GSW8	A0A1L8H0J8	A0A1L8GSW8	A0A1L8H0J8	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8GSW8	A0A1L8I1D3	A0A1L8GSW8	A0A1L8I1D3	Uncharacterized protein.	Uncharacterized protein.	0.627
A0A1L8GSW8	fbn3	A0A1L8GSW8	A0A1L8HW58	Uncharacterized protein.	Uncharacterized protein.	0.618
A0A1L8H0J8	A0A1L8GSW8	A0A1L8H0J8	A0A1L8GSW8	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8H0J8	A0A1L8I1D3	A0A1L8H0J8	A0A1L8I1D3	Uncharacterized protein.	Uncharacterized protein.	0.627
A0A1L8H0J8	fbn3	A0A1L8H0J8	A0A1L8HW58	Uncharacterized protein.	Uncharacterized protein.	0.618
A0A1L8H2E9	A0A1L8GGU0	A0A1L8H2E9	A0A1L8GGU0	Uncharacterized protein.	Uncharacterized protein.	0.444
A0A1L8H2E9	X-Delta-2	A0A1L8H2E9	P79941	Uncharacterized protein.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.909
A0A1L8H2E9	dll1	A0A1L8H2E9	A0A1L8G230	Uncharacterized protein.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.922
A0A1L8H2E9	dll1-2	A0A1L8H2E9	Q91902	Uncharacterized protein.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.922
A0A1L8H2E9	jag2	A0A1L8H2E9	A0A1L8EZY8	Uncharacterized protein.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.974
A0A1L8H2E9	jag2-2	A0A1L8H2E9	A0A1L8FA43	Uncharacterized protein.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.974
A0A1L8H2E9	notch1	A0A1L8H2E9	A0A1L8F627	Uncharacterized protein.	Uncharacterized protein.	0.591