(16 nodes) Glycosyl hydrolase, all-beta network (Xenopus laevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L8I344	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family. (685 aa)
	naga	Alpha-galactosidase. (410 aa)
	naga-2	Alpha-galactosidase. (412 aa)
	ganc	Gal_mutarotas_2 domain-containing protein; Belongs to the glycosyl hydrolase 31 family. (917 aa)
	A0A1L8GAR4	Uncharacterized protein. (2695 aa)
	A0A1L8GCZ7	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family. (691 aa)
	A0A1L8GD86	Gal_mutarotas_2 domain-containing protein; Belongs to the glycosyl hydrolase 31 family. (951 aa)
	A0A1L8GGH3	Alpha-amylase. (526 aa)
	A0A1L8GJB3	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family. (690 aa)
	man2b2	Alpha-mannosidase. (1004 aa)
	man2a1-2	Alpha-mannosidase. (1150 aa)
	Fuca1.L	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. (468 aa)
	A0A310U562	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family. (684 aa)
	gla	Alpha-galactosidase. (408 aa)
	man2a2	Alpha-mannosidase. (1150 aa)
	fuca2	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. (470 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8GAR4	A0A1L8GGH3	A0A1L8GAR4	A0A1L8GGH3	Uncharacterized protein.	Alpha-amylase.	0.940
A0A1L8GAR4	ganc	A0A1L8GAR4	A0A1L8FAY2	Uncharacterized protein.	Gal_mutarotas_2 domain-containing protein; Belongs to the glycosyl hydrolase 31 family.	0.910
A0A1L8GAR4	gla	A0A1L8GAR4	Q3KQ87	Uncharacterized protein.	Alpha-galactosidase.	0.932
A0A1L8GGH3	A0A1L8GAR4	A0A1L8GGH3	A0A1L8GAR4	Alpha-amylase.	Uncharacterized protein.	0.940
A0A1L8GGH3	ganc	A0A1L8GGH3	A0A1L8FAY2	Alpha-amylase.	Gal_mutarotas_2 domain-containing protein; Belongs to the glycosyl hydrolase 31 family.	0.927
Fuca1.L	fuca2	A0A310TRB4	Q6PAZ5	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	0.910
Fuca1.L	gla	A0A310TRB4	Q3KQ87	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	Alpha-galactosidase.	0.492
Fuca1.L	naga	A0A310TRB4	A0A1L8EQ28	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	Alpha-galactosidase.	0.490
Fuca1.L	naga-2	A0A310TRB4	A0A1L8EXG5	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	Alpha-galactosidase.	0.491
fuca2	Fuca1.L	Q6PAZ5	A0A310TRB4	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	0.910
fuca2	gla	Q6PAZ5	Q3KQ87	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	Alpha-galactosidase.	0.585
fuca2	naga	Q6PAZ5	A0A1L8EQ28	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	Alpha-galactosidase.	0.489
fuca2	naga-2	Q6PAZ5	A0A1L8EXG5	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	Alpha-galactosidase.	0.493
ganc	A0A1L8GAR4	A0A1L8FAY2	A0A1L8GAR4	Gal_mutarotas_2 domain-containing protein; Belongs to the glycosyl hydrolase 31 family.	Uncharacterized protein.	0.910
ganc	A0A1L8GGH3	A0A1L8FAY2	A0A1L8GGH3	Gal_mutarotas_2 domain-containing protein; Belongs to the glycosyl hydrolase 31 family.	Alpha-amylase.	0.927
ganc	gla	A0A1L8FAY2	Q3KQ87	Gal_mutarotas_2 domain-containing protein; Belongs to the glycosyl hydrolase 31 family.	Alpha-galactosidase.	0.925
gla	A0A1L8GAR4	Q3KQ87	A0A1L8GAR4	Alpha-galactosidase.	Uncharacterized protein.	0.932
gla	Fuca1.L	Q3KQ87	A0A310TRB4	Alpha-galactosidase.	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	0.492
gla	fuca2	Q3KQ87	Q6PAZ5	Alpha-galactosidase.	Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.	0.585
gla	ganc	Q3KQ87	A0A1L8FAY2	Alpha-galactosidase.	Gal_mutarotas_2 domain-containing protein; Belongs to the glycosyl hydrolase 31 family.	0.925