54 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L8GD59	Tetraspanin. (330 aa)
	A0A1L8GXX3	Tetraspanin. (270 aa)
	tspan12	Tetraspanin. (296 aa)
	A0A1L8GU19	Tetraspanin. (250 aa)
	tspan33	Tetraspanin. (282 aa)
	A0A1L8GS57	Tetraspanin. (314 aa)
	A0A1L8ENI5	Uncharacterized protein; Belongs to the tetraspanin (TM4SF) family. (107 aa)
	Cd37b	Tetraspanin. (270 aa)
	tspan6-2	Tetraspanin. (252 aa)
	tspan9	Tetraspanin. (239 aa)
	A0A1L8GQR8	Tetraspanin. (261 aa)
	A0A1L8GJE0	Tetraspanin. (330 aa)
	tspan32	Uncharacterized protein; Belongs to the tetraspanin (TM4SF) family. (259 aa)
	tspan18	Tetraspanin. (247 aa)
	tspan1	Tetraspanin. (244 aa)
	tspan15	Tetraspanin. (297 aa)
	tspan12-2	Tetraspanin. (304 aa)
	cd151	Tetraspanin. (253 aa)
	upk1a	Tetraspanin. (252 aa)
	cd37	Tetraspanin. (268 aa)
	tspan4	Tetraspanin. (315 aa)
	cd53	Tetraspanin. (225 aa)
	tspan3	Tetraspanin. (253 aa)
	rds36	Rds36 protein. (345 aa)
	tspan6	Tetraspanin. (252 aa)
	LOC100036800	Tetraspanin. (244 aa)
	A0A1L8HXI0	Tetraspanin. (273 aa)
	tspan2-2	Tetraspanin. (226 aa)
	upk1b	Tetraspanin. (280 aa)
	A0A1L8H775	Tetraspanin. (244 aa)
	tspan7	Tetraspanin. (249 aa)
	tspan2	Tetraspanin. (226 aa)
	A0A1L8H1G7	Tetraspanin. (312 aa)
	tspan33-2	Tetraspanin. (282 aa)
	A0A1L8GZ38	Tetraspanin. (250 aa)
	prph-2	Peripherin-2. (346 aa)
	tspan5	Tetraspanin. (268 aa)
	tspan7-2	Tetraspanin. (249 aa)
	cd63-2	Tetraspanin. (238 aa)
	prph2	MGC64379 protein. (350 aa)
	MGC79057	Tetraspanin. (255 aa)
	tspan18-2	Tetraspanin. (247 aa)
	MGC80751	Tetraspanin. (240 aa)
	tspan15-2	Tetraspanin. (297 aa)
	MGC84108	MGC84108 protein. (364 aa)
	MGC82181	Tetraspanin. (228 aa)
	upk1b-2	Tetraspanin. (259 aa)
	tspan14	Tetraspanin. (270 aa)
	cd151-2	Tetraspanin. (253 aa)
	cd63	Tetraspanin. (240 aa)
	tspan3-2	Tetraspanin. (253 aa)
	cd53-2	Tetraspanin. (231 aa)
	tspan13	LOC495385 protein; Belongs to the tetraspanin (TM4SF) family. (201 aa)
	LOC496019	Tetraspanin. (245 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8GD59	tspan14	A0A1L8GD59	Q6DEA3	Tetraspanin.	Tetraspanin.	0.553
A0A1L8GJE0	tspan14	A0A1L8GJE0	Q6DEA3	Tetraspanin.	Tetraspanin.	0.553
A0A1L8GQR8	MGC82181	A0A1L8GQR8	Q6DKM9	Tetraspanin.	Tetraspanin.	0.532
A0A1L8GS57	MGC82181	A0A1L8GS57	Q6DKM9	Tetraspanin.	Tetraspanin.	0.453
A0A1L8GS57	tspan1	A0A1L8GS57	A0A1L8GFR0	Tetraspanin.	Tetraspanin.	0.882
A0A1L8GS57	tspan2	A0A1L8GS57	A0A1L8H695	Tetraspanin.	Tetraspanin.	0.694
A0A1L8GS57	tspan2-2	A0A1L8GS57	A0A1L8HDZ1	Tetraspanin.	Tetraspanin.	0.694
A0A1L8GXX3	MGC82181	A0A1L8GXX3	Q6DKM9	Tetraspanin.	Tetraspanin.	0.440
A0A1L8H1G7	MGC82181	A0A1L8H1G7	Q6DKM9	Tetraspanin.	Tetraspanin.	0.453
A0A1L8H1G7	tspan1	A0A1L8H1G7	A0A1L8GFR0	Tetraspanin.	Tetraspanin.	0.882
A0A1L8H1G7	tspan2	A0A1L8H1G7	A0A1L8H695	Tetraspanin.	Tetraspanin.	0.694
A0A1L8H1G7	tspan2-2	A0A1L8H1G7	A0A1L8HDZ1	Tetraspanin.	Tetraspanin.	0.694
Cd37b	MGC82181	A0A1L8FGP7	Q6DKM9	Tetraspanin.	Tetraspanin.	0.448
Cd37b	cd63	A0A1L8FGP7	Q6DCP2	Tetraspanin.	Tetraspanin.	0.407
Cd37b	cd63-2	A0A1L8FGP7	Q7SY95	Tetraspanin.	Tetraspanin.	0.408
LOC100036800	cd63	A0JPH8	Q6DCP2	Tetraspanin.	Tetraspanin.	0.904
LOC100036800	cd63-2	A0JPH8	Q7SY95	Tetraspanin.	Tetraspanin.	0.905
MGC79057	MGC82181	Q6IP10	Q6DKM9	Tetraspanin.	Tetraspanin.	0.608
MGC79057	cd63	Q6IP10	Q6DCP2	Tetraspanin.	Tetraspanin.	0.557
MGC79057	cd63-2	Q6IP10	Q7SY95	Tetraspanin.	Tetraspanin.	0.562