23 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L8G3F7	Arf-GAP domain-containing protein. (471 aa)
	A0A1L8GIQ0	Arf-GAP domain-containing protein. (523 aa)
	agfg1	Arf-GAP domain-containing protein. (554 aa)
	acap2	Uncharacterized protein. (791 aa)
	smap1	Arf-GAP domain-containing protein. (471 aa)
	asap2	Uncharacterized protein. (1029 aa)
	Acap3.L	Uncharacterized protein. (784 aa)
	git2	MGC80878 protein. (759 aa)
	adap1	MGC80649 protein. (375 aa)
	A0A1L8HKZ9	Uncharacterized protein. (1559 aa)
	A0A1L8HFL3	Arf-GAP domain-containing protein. (421 aa)
	asap3	Uncharacterized protein. (876 aa)
	Git1	Uncharacterized protein. (737 aa)
	A0A1L8HBH1	Uncharacterized protein. (1627 aa)
	arfgap1-2	Arf-GAP domain-containing protein. (417 aa)
	A0A1L8EQC8	Uncharacterized protein. (375 aa)
	adap2	Uncharacterized protein. (379 aa)
	arfgap1	Arf-GAP domain-containing protein. (421 aa)
	acap3	Uncharacterized protein. (871 aa)
	A0A1L8EU39	Uncharacterized protein. (982 aa)
	A0A1L8H9V1	Uncharacterized protein. (1966 aa)
	A0A1L8H4T5	Uncharacterized protein. (729 aa)
	A0A1L8GX86	Uncharacterized protein. (1803 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8G3F7	arfgap1	A0A1L8G3F7	A0A1L8ELT9	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.404
A0A1L8G3F7	arfgap1-2	A0A1L8G3F7	A0A1L8ET23	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.404
A0A1L8GIQ0	arfgap1	A0A1L8GIQ0	A0A1L8ELT9	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.844
A0A1L8GIQ0	arfgap1-2	A0A1L8GIQ0	A0A1L8ET23	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.844
A0A1L8H4T5	Git1	A0A1L8H4T5	A0A1L8HD66	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8HFL3	arfgap1	A0A1L8HFL3	A0A1L8ELT9	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.404
A0A1L8HFL3	arfgap1-2	A0A1L8HFL3	A0A1L8ET23	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.404
Git1	A0A1L8H4T5	A0A1L8HD66	A0A1L8H4T5	Uncharacterized protein.	Uncharacterized protein.	0.900
arfgap1	A0A1L8G3F7	A0A1L8ELT9	A0A1L8G3F7	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.404
arfgap1	A0A1L8GIQ0	A0A1L8ELT9	A0A1L8GIQ0	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.844
arfgap1	A0A1L8HFL3	A0A1L8ELT9	A0A1L8HFL3	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.404
arfgap1	smap1	A0A1L8ELT9	A0A1L8G9P3	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.404
arfgap1-2	A0A1L8G3F7	A0A1L8ET23	A0A1L8G3F7	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.404
arfgap1-2	A0A1L8GIQ0	A0A1L8ET23	A0A1L8GIQ0	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.844
arfgap1-2	A0A1L8HFL3	A0A1L8ET23	A0A1L8HFL3	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.404
arfgap1-2	smap1	A0A1L8ET23	A0A1L8G9P3	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.404
smap1	arfgap1	A0A1L8G9P3	A0A1L8ELT9	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.404
smap1	arfgap1-2	A0A1L8G9P3	A0A1L8ET23	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.404