40 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	trim25	Uncharacterized protein. (622 aa)
	trim65	Uncharacterized protein. (536 aa)
	A0A1L8EV25	Uncharacterized protein. (567 aa)
	trim25-2	Uncharacterized protein. (661 aa)
	irf3	IRF tryptophan pentad repeat domain-containing protein. (471 aa)
	A0A1L8FHJ7	MI domain-containing protein. (1560 aa)
	Irf3.L	IRF tryptophan pentad repeat domain-containing protein. (466 aa)
	A0A1L8FP62	Uncharacterized protein. (1721 aa)
	A0A1L8G1N4	Uncharacterized protein; Belongs to the DEAD box helicase family. (413 aa)
	A0A1L8G1V3	Helicase C-terminal domain-containing protein. (115 aa)
	A0A1L8G3R0	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (233 aa)
	ppm1b	PPM-type phosphatase domain-containing protein. (387 aa)
	Eif4a3.S	Uncharacterized protein. (287 aa)
	A0A1L8G7H7	Uncharacterized protein. (528 aa)
	A0A1L8G7R6	Uncharacterized protein. (427 aa)
	A0A1L8G7W0	Uncharacterized protein. (436 aa)
	Eif4a2.L	Uncharacterized protein; Belongs to the DEAD box helicase family. (360 aa)
	A0A1L8GA53	Importin subunit alpha; Belongs to the importin alpha family. (520 aa)
	Eif4g2.S	Uncharacterized protein. (908 aa)
	Eif4e3.S	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (212 aa)
	Nat1	Uncharacterized protein. (1006 aa)
	Eif4e3.L	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (190 aa)
	Usp18.S	USP domain-containing protein. (321 aa)
	arih1	RBR-type E3 ubiquitin transferase. (572 aa)
	Ube2n.S	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
	A0A1L8GUZ9	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (217 aa)
	A0A1L8GY11	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (246 aa)
	ube2n	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
	arih1-2	RBR-type E3 ubiquitin transferase. (529 aa)
	eif4e2	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (200 aa)
	A0A1L8HCA5	GED domain-containing protein. (204 aa)
	mx1	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (624 aa)
	Eif4e1b.S	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (280 aa)
	eif2ak2	Double stranded RNA activated protein kinase 1. (578 aa)
	Imp_alpha_4	Importin subunit alpha; Belongs to the importin alpha family. (521 aa)
	eif4e	MGC85107 protein; Belongs to the eukaryotic initiation factor 4E family. (213 aa)
	ppm1b-2	MGC80245 protein. (455 aa)
	kpna3	Importin subunit alpha; Belongs to the importin alpha family. (521 aa)
	kpna4	Importin subunit alpha; Belongs to the importin alpha family. (520 aa)
	eif4a1	LOC443739 protein; Belongs to the DEAD box helicase family. (406 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EV25	A0A1L8G3R0	A0A1L8EV25	A0A1L8G3R0	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.544
A0A1L8EV25	Ube2n.S	A0A1L8EV25	A0A1L8GUM3	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.660
A0A1L8EV25	ube2n	A0A1L8EV25	A0A1L8GYC6	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.660
A0A1L8FHJ7	A0A1L8G1N4	A0A1L8FHJ7	A0A1L8G1N4	MI domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.665
A0A1L8FHJ7	A0A1L8G1V3	A0A1L8FHJ7	A0A1L8G1V3	MI domain-containing protein.	Helicase C-terminal domain-containing protein.	0.665
A0A1L8FHJ7	A0A1L8G3R0	A0A1L8FHJ7	A0A1L8G3R0	MI domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.852
A0A1L8FHJ7	A0A1L8GUZ9	A0A1L8FHJ7	A0A1L8GUZ9	MI domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.942
A0A1L8FHJ7	A0A1L8GY11	A0A1L8FHJ7	A0A1L8GY11	MI domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.942
A0A1L8FHJ7	Eif4a2.L	A0A1L8FHJ7	A0A1L8GA12	MI domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.987
A0A1L8FHJ7	Eif4a3.S	A0A1L8FHJ7	A0A1L8G798	MI domain-containing protein.	Uncharacterized protein.	0.665
A0A1L8FHJ7	Eif4e1b.S	A0A1L8FHJ7	A0A1L8HM93	MI domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.971
A0A1L8FHJ7	Eif4e3.L	A0A1L8FHJ7	A0A1L8GPY8	MI domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.800
A0A1L8FHJ7	Eif4e3.S	A0A1L8FHJ7	A0A1L8GHY7	MI domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.800
A0A1L8FHJ7	eif4a1	A0A1L8FHJ7	Q6NU02	MI domain-containing protein.	LOC443739 protein; Belongs to the DEAD box helicase family.	0.987
A0A1L8FHJ7	eif4e	A0A1L8FHJ7	Q5HZ86	MI domain-containing protein.	MGC85107 protein; Belongs to the eukaryotic initiation factor 4E family.	0.971
A0A1L8FHJ7	eif4e2	A0A1L8FHJ7	A0A1L8H3P7	MI domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.736
A0A1L8FP62	A0A1L8G1N4	A0A1L8FP62	A0A1L8G1N4	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.665
A0A1L8FP62	A0A1L8G1V3	A0A1L8FP62	A0A1L8G1V3	Uncharacterized protein.	Helicase C-terminal domain-containing protein.	0.665
A0A1L8FP62	A0A1L8G3R0	A0A1L8FP62	A0A1L8G3R0	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.852
A0A1L8FP62	A0A1L8GUZ9	A0A1L8FP62	A0A1L8GUZ9	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.942