63 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L8GG25	Uncharacterized protein. (1252 aa)
	A0A1L8HX68	Ubiquitin-like domain-containing protein. (173 aa)
	Kxd1.L	KxDL domain-containing protein. (195 aa)
	Ythdc1.L	YTH domain-containing protein. (629 aa)
	Nfkb1.L	Uncharacterized protein. (959 aa)
	ubc	Uncharacterized protein. (533 aa)
	kxd1	KxDL domain-containing protein. (195 aa)
	A0A1L8HMR3	YTH domain-containing protein. (31 aa)
	A0A1L8HMN6	YTH domain-containing protein. (157 aa)
	A0A1L8HMN3	Uncharacterized protein. (131 aa)
	A0A1L8HMN0	Uncharacterized protein. (64 aa)
	A0A1L8HMM7	Uncharacterized protein. (164 aa)
	Nfkb1.S	Uncharacterized protein. (894 aa)
	mre11	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (711 aa)
	A0A1L8HCZ9	Uncharacterized protein. (307 aa)
	ikbkb	Uncharacterized protein. (769 aa)
	ccdc71l-2	Uncharacterized protein. (213 aa)
	ddx41	Uncharacterized protein. (614 aa)
	fam193b	FAM193_C domain-containing protein. (888 aa)
	ccdc71l	Uncharacterized protein. (209 aa)
	A0A1L8GRD3	Uncharacterized protein. (343 aa)
	A0A1L8GMQ0	Uncharacterized protein. (1244 aa)
	ythdc2	Uncharacterized protein. (1417 aa)
	dhx36-2	Uncharacterized protein. (1000 aa)
	A0A1L8GAE5	Uncharacterized protein. (371 aa)
	dhx57	Uncharacterized protein. (1404 aa)
	A0A1L8G5V1	Ubiquitin-like domain-containing protein. (156 aa)
	dhx36	Uncharacterized protein. (977 aa)
	A0A1L8G462	Uncharacterized protein. (568 aa)
	A0A1L8FWT8	Uncharacterized protein. (655 aa)
	myd88	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (283 aa)
	A0A1L8FUU1	Uncharacterized protein. (751 aa)
	A0A1L8FTA7	Ubiquitin-like domain-containing protein. (105 aa)
	nkiras1	Uncharacterized protein. (203 aa)
	Myd88.S	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (286 aa)
	dhx30	Uncharacterized protein. (1190 aa)
	Irf3.L	IRF tryptophan pentad repeat domain-containing protein. (466 aa)
	nfkb2	Uncharacterized protein. (960 aa)
	irf3	IRF tryptophan pentad repeat domain-containing protein. (471 aa)
	Nfkbia.L	ANK_REP_REGION domain-containing protein. (315 aa)
	trim32	Uncharacterized protein. (649 aa)
	trex2	Exonuclease domain-containing protein. (232 aa)
	A0A1L8F1J6	NEMO domain-containing protein. (307 aa)
	Nfkbia.S	ANK_REP_REGION domain-containing protein. (312 aa)
	Nlrc3.L	Uncharacterized protein. (986 aa)
	A0A1L8EWP8	Uncharacterized protein. (100 aa)
	A0A1L8EWM1	Uncharacterized protein. (88 aa)
	A0A1L8EWK5	Uncharacterized protein. (629 aa)
	A0A1L8EWJ7	Uncharacterized protein. (80 aa)
	A0A1L8EWJ6	Uncharacterized protein. (59 aa)
	A0A1L8ESU9	Uncharacterized protein. (278 aa)
	nkiras2	Uncharacterized protein. (190 aa)
	A0A1L8EPH4	Uncharacterized protein. (898 aa)
	A0A1L8EK50	Exonuclease domain-containing protein. (175 aa)
	A0A1L8EJY7	Uncharacterized protein. (68 aa)
	ctnnb1-2	Ctnnb1-prov protein. (781 aa)
	ubc-2	Ubc-prov protein. (609 aa)
	uba52	MGC80109 protein. (128 aa)
	rps27a	MGC81889 protein. (156 aa)
	ctnnb1	Beta-catenin protein. (781 aa)
	MGC115632	MGC115632 protein. (478 aa)
	nfkb2-2	LOC397698 protein. (959 aa)
	dhx29	ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1364 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EJY7	A0A1L8FUU1	A0A1L8EJY7	A0A1L8FUU1	Uncharacterized protein.	Uncharacterized protein.	0.502
A0A1L8EJY7	Myd88.S	A0A1L8EJY7	A0A1L8FQF6	Uncharacterized protein.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.734
A0A1L8EJY7	ddx41	A0A1L8EJY7	A0A1L8GXY5	Uncharacterized protein.	Uncharacterized protein.	0.643
A0A1L8EJY7	dhx29	A0A1L8EJY7	A0A1L8I2C1	Uncharacterized protein.	ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily.	0.497
A0A1L8EJY7	dhx30	A0A1L8EJY7	A0A1L8FQF5	Uncharacterized protein.	Uncharacterized protein.	0.502
A0A1L8EJY7	dhx36	A0A1L8EJY7	A0A1L8G4F5	Uncharacterized protein.	Uncharacterized protein.	0.593
A0A1L8EJY7	dhx36-2	A0A1L8EJY7	A0A1L8GAK8	Uncharacterized protein.	Uncharacterized protein.	0.593
A0A1L8EJY7	dhx57	A0A1L8EJY7	A0A1L8G7N6	Uncharacterized protein.	Uncharacterized protein.	0.497
A0A1L8EJY7	fam193b	A0A1L8EJY7	A0A1L8GV03	Uncharacterized protein.	FAM193_C domain-containing protein.	0.567
A0A1L8EJY7	myd88	A0A1L8EJY7	A0A1L8FV26	Uncharacterized protein.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.734
A0A1L8EJY7	ythdc2	A0A1L8EJY7	A0A1L8I289	Uncharacterized protein.	Uncharacterized protein.	0.717
A0A1L8EK50	mre11	A0A1L8EK50	A0A1L8HJD9	Exonuclease domain-containing protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.906
A0A1L8ESU9	Irf3.L	A0A1L8ESU9	A0A1L8FNA8	Uncharacterized protein.	IRF tryptophan pentad repeat domain-containing protein.	0.973
A0A1L8ESU9	ddx41	A0A1L8ESU9	A0A1L8GXY5	Uncharacterized protein.	Uncharacterized protein.	0.650
A0A1L8ESU9	ikbkb	A0A1L8ESU9	A0A1L8H261	Uncharacterized protein.	Uncharacterized protein.	0.468
A0A1L8ESU9	irf3	A0A1L8ESU9	A0A1L8FGY4	Uncharacterized protein.	IRF tryptophan pentad repeat domain-containing protein.	0.972
A0A1L8F1J6	A0A1L8HCZ9	A0A1L8F1J6	A0A1L8HCZ9	NEMO domain-containing protein.	Uncharacterized protein.	0.549
A0A1L8F1J6	ikbkb	A0A1L8F1J6	A0A1L8H261	NEMO domain-containing protein.	Uncharacterized protein.	0.983
A0A1L8F1J6	ubc	A0A1L8F1J6	A0A1L8HQK4	NEMO domain-containing protein.	Uncharacterized protein.	0.549
A0A1L8F1J6	ubc-2	A0A1L8F1J6	Q7SY79	NEMO domain-containing protein.	Ubc-prov protein.	0.549