23 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Ptpn11.S	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (595 aa)
	yes1	Tyrosine-protein kinase. (537 aa)
	ptpn11b	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (594 aa)
	pecam1-2	Platelet endothelial cell adhesion molecule. (727 aa)
	ptpn6-2	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (587 aa)
	src	Tyrosine-protein kinase. (532 aa)
	itgb3	Integrin beta; Belongs to the integrin beta chain family. (788 aa)
	A0A1L8I158	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (608 aa)
	fndc3a-2	Uncharacterized protein. (1200 aa)
	fndc3a	Uncharacterized protein. (1202 aa)
	Inpp5d.L	SH2 domain-containing protein. (1111 aa)
	fndc3b-2	Uncharacterized protein. (1204 aa)
	inpp5d	SH2 domain-containing protein. (1099 aa)
	fndc3b	Uncharacterized protein. (1205 aa)
	lyn-2	Tyrosine-protein kinase. (508 aa)
	lyn	Tyrosine-protein kinase. (508 aa)
	A0A1L8FSV1	Tyrosine-protein kinase. (400 aa)
	A0A1L8FG16	Uncharacterized protein. (559 aa)
	ptpn6	Uncharacterized protein. (687 aa)
	fndc3c	Uncharacterized protein. (1205 aa)
	A0A1L8F3B0	Uncharacterized protein. (1205 aa)
	Itgav.L	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1080 aa)
	pecam1	Uncharacterized protein. (684 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8FG16	A0A1L8FSV1	A0A1L8FG16	A0A1L8FSV1	Uncharacterized protein.	Tyrosine-protein kinase.	0.551
A0A1L8FG16	Inpp5d.L	A0A1L8FG16	A0A1L8GB96	Uncharacterized protein.	SH2 domain-containing protein.	0.567
A0A1L8FG16	inpp5d	A0A1L8FG16	A0A1L8G4S3	Uncharacterized protein.	SH2 domain-containing protein.	0.567
A0A1L8FG16	lyn	A0A1L8FG16	A0A1L8FT48	Uncharacterized protein.	Tyrosine-protein kinase.	0.562
A0A1L8FG16	lyn-2	A0A1L8FG16	A0A1L8FZ11	Uncharacterized protein.	Tyrosine-protein kinase.	0.562
A0A1L8FG16	pecam1	A0A1L8FG16	A0A1L8ENK4	Uncharacterized protein.	Uncharacterized protein.	0.848
A0A1L8FG16	pecam1-2	A0A1L8FG16	Q5W5X8	Uncharacterized protein.	Platelet endothelial cell adhesion molecule.	0.848
A0A1L8FG16	ptpn6	A0A1L8FG16	A0A1L8FDW3	Uncharacterized protein.	Uncharacterized protein.	0.487
A0A1L8FG16	ptpn6-2	A0A1L8FG16	Q4V854	Uncharacterized protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.484
A0A1L8FG16	src	A0A1L8FG16	Q2TAR1	Uncharacterized protein.	Tyrosine-protein kinase.	0.597
A0A1L8FG16	yes1	A0A1L8FG16	Q6PF70	Uncharacterized protein.	Tyrosine-protein kinase.	0.551
A0A1L8FSV1	A0A1L8FG16	A0A1L8FSV1	A0A1L8FG16	Tyrosine-protein kinase.	Uncharacterized protein.	0.551
A0A1L8FSV1	A0A1L8I158	A0A1L8FSV1	A0A1L8I158	Tyrosine-protein kinase.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.551
A0A1L8FSV1	Inpp5d.L	A0A1L8FSV1	A0A1L8GB96	Tyrosine-protein kinase.	SH2 domain-containing protein.	0.476
A0A1L8FSV1	Itgav.L	A0A1L8FSV1	A0A1L8EX87	Tyrosine-protein kinase.	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	0.621
A0A1L8FSV1	Ptpn11.S	A0A1L8FSV1	Q92124	Tyrosine-protein kinase.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.551
A0A1L8FSV1	inpp5d	A0A1L8FSV1	A0A1L8G4S3	Tyrosine-protein kinase.	SH2 domain-containing protein.	0.476
A0A1L8FSV1	itgb3	A0A1L8FSV1	B7ZQZ8	Tyrosine-protein kinase.	Integrin beta; Belongs to the integrin beta chain family.	0.680
A0A1L8FSV1	lyn	A0A1L8FSV1	A0A1L8FT48	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.604
A0A1L8FSV1	lyn-2	A0A1L8FSV1	A0A1L8FZ11	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.603