29 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ubc-2	Ubc-prov protein. (609 aa)
	Dtx4.L	Uncharacterized protein. (828 aa)
	mib1	Uncharacterized protein. (1015 aa)
	A0A1L8EMM1	E3 ubiquitin-protein ligase. (848 aa)
	A0A1L8EU80	E3 ubiquitin-protein ligase. (852 aa)
	jag2	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1223 aa)
	mib1-2	Uncharacterized protein. (1011 aa)
	Dlk1.S	Uncharacterized protein. (372 aa)
	Notch1.S	Uncharacterized protein. (2524 aa)
	dner-2	Dnera protein. (678 aa)
	cntn1-2	Contactin/F3/F11. (1005 aa)
	A0A1L8HCZ9	Uncharacterized protein. (307 aa)
	dtx2	Uncharacterized protein. (590 aa)
	neurl1b-2	Uncharacterized protein. (552 aa)
	neurl1b	Uncharacterized protein. (552 aa)
	A0A1L8G5V1	Ubiquitin-like domain-containing protein. (156 aa)
	dner	Uncharacterized protein. (678 aa)
	A0A1L8F3L0	Uncharacterized protein. (2377 aa)
	notch1	Uncharacterized protein. (2521 aa)
	neurl1-2	Neuralized. (555 aa)
	neurl1	Uncharacterized protein. (555 aa)
	rps27a	MGC81889 protein. (156 aa)
	Dlk1.L	Uncharacterized protein. (382 aa)
	jag2-2	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1227 aa)
	cntn1	Contactin A. (1009 aa)
	dtx1-2	XDTX1 protein. (623 aa)
	dtx1	Uncharacterized protein. (623 aa)
	ubc	Uncharacterized protein. (533 aa)
	dtx2-2	Uncharacterized protein. (592 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EMM1	A0A1L8EU80	A0A1L8EMM1	A0A1L8EU80	E3 ubiquitin-protein ligase.	E3 ubiquitin-protein ligase.	0.900
A0A1L8EMM1	A0A1L8G5V1	A0A1L8EMM1	A0A1L8G5V1	E3 ubiquitin-protein ligase.	Ubiquitin-like domain-containing protein.	0.926
A0A1L8EMM1	A0A1L8HCZ9	A0A1L8EMM1	A0A1L8HCZ9	E3 ubiquitin-protein ligase.	Uncharacterized protein.	0.837
A0A1L8EMM1	Dtx4.L	A0A1L8EMM1	A0A1L8FKN6	E3 ubiquitin-protein ligase.	Uncharacterized protein.	0.614
A0A1L8EMM1	dtx1	A0A1L8EMM1	A0A1L8HZV8	E3 ubiquitin-protein ligase.	Uncharacterized protein.	0.614
A0A1L8EMM1	dtx1-2	A0A1L8EMM1	B7ZRU0	E3 ubiquitin-protein ligase.	XDTX1 protein.	0.614
A0A1L8EMM1	dtx2	A0A1L8EMM1	A0A1L8H8A0	E3 ubiquitin-protein ligase.	Uncharacterized protein.	0.614
A0A1L8EMM1	dtx2-2	A0A1L8EMM1	A0A1L8HFZ6	E3 ubiquitin-protein ligase.	Uncharacterized protein.	0.614
A0A1L8EMM1	rps27a	A0A1L8EMM1	Q6GMC1	E3 ubiquitin-protein ligase.	MGC81889 protein.	0.926
A0A1L8EMM1	ubc	A0A1L8EMM1	A0A1L8HQK4	E3 ubiquitin-protein ligase.	Uncharacterized protein.	0.837
A0A1L8EMM1	ubc-2	A0A1L8EMM1	Q7SY79	E3 ubiquitin-protein ligase.	Ubc-prov protein.	0.837
A0A1L8EU80	A0A1L8EMM1	A0A1L8EU80	A0A1L8EMM1	E3 ubiquitin-protein ligase.	E3 ubiquitin-protein ligase.	0.900
A0A1L8EU80	A0A1L8G5V1	A0A1L8EU80	A0A1L8G5V1	E3 ubiquitin-protein ligase.	Ubiquitin-like domain-containing protein.	0.926
A0A1L8EU80	A0A1L8HCZ9	A0A1L8EU80	A0A1L8HCZ9	E3 ubiquitin-protein ligase.	Uncharacterized protein.	0.837
A0A1L8EU80	Dtx4.L	A0A1L8EU80	A0A1L8FKN6	E3 ubiquitin-protein ligase.	Uncharacterized protein.	0.614
A0A1L8EU80	dtx1	A0A1L8EU80	A0A1L8HZV8	E3 ubiquitin-protein ligase.	Uncharacterized protein.	0.614
A0A1L8EU80	dtx1-2	A0A1L8EU80	B7ZRU0	E3 ubiquitin-protein ligase.	XDTX1 protein.	0.614
A0A1L8EU80	dtx2	A0A1L8EU80	A0A1L8H8A0	E3 ubiquitin-protein ligase.	Uncharacterized protein.	0.614
A0A1L8EU80	dtx2-2	A0A1L8EU80	A0A1L8HFZ6	E3 ubiquitin-protein ligase.	Uncharacterized protein.	0.614
A0A1L8EU80	rps27a	A0A1L8EU80	Q6GMC1	E3 ubiquitin-protein ligase.	MGC81889 protein.	0.926