22 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Sumo1.L	Ubiquitin-like domain-containing protein. (148 aa)
	A0A1L8EXX7	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (200 aa)
	phc1	Uncharacterized protein. (843 aa)
	phc1-2	Uncharacterized protein. (846 aa)
	Seh1l.S	Uncharacterized protein; Belongs to the WD repeat SEC13 family. (383 aa)
	Seh1l.L	Uncharacterized protein; Belongs to the WD repeat SEC13 family. (383 aa)
	Phc3.L	Uncharacterized protein. (938 aa)
	ranbp3	RanBD1 domain-containing protein. (520 aa)
	Nup205.L	Uncharacterized protein. (99 aa)
	Phc2.L	Uncharacterized protein. (718 aa)
	A0A1L8I2I7	RanBD1 domain-containing protein. (514 aa)
	ranbp3l	RanBD1 domain-containing protein. (516 aa)
	cbx2-2	Polycomb homolog Pc1. (471 aa)
	ranbp3-2	Ran binding protein 3. (516 aa)
	nop58	MGC78950 protein. (534 aa)
	A0A310U4U7	Uncharacterized protein. (100 aa)
	cbx2	Chromo domain-containing protein. (473 aa)
	A0A1L8EMT3	BTB domain-containing protein. (239 aa)
	Sumo1.S	Ubiquitin-like domain-containing protein. (141 aa)
	Nop58.S	Nop domain-containing protein. (475 aa)
	ube2i	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	A0A1L8EUE2	BTB domain-containing protein. (245 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EMT3	Nop58.S	A0A1L8EMT3	A0A1L8EPS3	BTB domain-containing protein.	Nop domain-containing protein.	0.629
A0A1L8EMT3	Nup205.L	A0A1L8EMT3	A0A310U2L0	BTB domain-containing protein.	Uncharacterized protein.	0.592
A0A1L8EMT3	Seh1l.L	A0A1L8EMT3	A0A1L8FYF0	BTB domain-containing protein.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.630
A0A1L8EMT3	Seh1l.S	A0A1L8EMT3	A0A1L8FSQ3	BTB domain-containing protein.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.630
A0A1L8EMT3	Sumo1.L	A0A1L8EMT3	A0A1L8EWZ5	BTB domain-containing protein.	Ubiquitin-like domain-containing protein.	0.914
A0A1L8EMT3	Sumo1.S	A0A1L8EMT3	A0A1L8EPQ0	BTB domain-containing protein.	Ubiquitin-like domain-containing protein.	0.914
A0A1L8EMT3	cbx2	A0A1L8EMT3	A0A1L8EM82	BTB domain-containing protein.	Chromo domain-containing protein.	0.400
A0A1L8EMT3	cbx2-2	A0A1L8EMT3	Q9YHC4	BTB domain-containing protein.	Polycomb homolog Pc1.	0.400
A0A1L8EMT3	nop58	A0A1L8EMT3	Q0P3Q8	BTB domain-containing protein.	MGC78950 protein.	0.629
A0A1L8EUE2	Nop58.S	A0A1L8EUE2	A0A1L8EPS3	BTB domain-containing protein.	Nop domain-containing protein.	0.629
A0A1L8EUE2	Nup205.L	A0A1L8EUE2	A0A310U2L0	BTB domain-containing protein.	Uncharacterized protein.	0.592
A0A1L8EUE2	Seh1l.L	A0A1L8EUE2	A0A1L8FYF0	BTB domain-containing protein.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.630
A0A1L8EUE2	Seh1l.S	A0A1L8EUE2	A0A1L8FSQ3	BTB domain-containing protein.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.630
A0A1L8EUE2	Sumo1.L	A0A1L8EUE2	A0A1L8EWZ5	BTB domain-containing protein.	Ubiquitin-like domain-containing protein.	0.914
A0A1L8EUE2	Sumo1.S	A0A1L8EUE2	A0A1L8EPQ0	BTB domain-containing protein.	Ubiquitin-like domain-containing protein.	0.914
A0A1L8EUE2	cbx2	A0A1L8EUE2	A0A1L8EM82	BTB domain-containing protein.	Chromo domain-containing protein.	0.400
A0A1L8EUE2	cbx2-2	A0A1L8EUE2	Q9YHC4	BTB domain-containing protein.	Polycomb homolog Pc1.	0.400
A0A1L8EUE2	nop58	A0A1L8EUE2	Q0P3Q8	BTB domain-containing protein.	MGC78950 protein.	0.629
A0A1L8EXX7	A0A310U4U7	A0A1L8EXX7	A0A310U4U7	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.462
A0A1L8EXX7	Nop58.S	A0A1L8EXX7	A0A1L8EPS3	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Nop domain-containing protein.	0.654