48 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tnfsf10	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (282 aa)
	Birc7.L	RING-type domain-containing protein. (401 aa)
	Cflar.S	Uncharacterized protein; Belongs to the peptidase C14A family. (493 aa)
	stub1	Uncharacterized protein. (310 aa)
	A0A1L8ET49	RING-type domain-containing protein. (407 aa)
	cflar	Uncharacterized protein; Belongs to the peptidase C14A family. (502 aa)
	stub1-2	Uncharacterized protein. (309 aa)
	A0A1L8F2K4	RING-type domain-containing protein. (107 aa)
	Flot1.S	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily. (648 aa)
	A0A1L8F6Z3	Glyco_transf_41 domain-containing protein. (133 aa)
	A0A1L8F7B5	RING-type domain-containing protein. (488 aa)
	A0A1L8FAQ5	TPR_REGION domain-containing protein. (1925 aa)
	Ripk3.S	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (425 aa)
	A0A1L8FE31	Uncharacterized protein. (332 aa)
	A0A1L8FII3	Uncharacterized protein. (314 aa)
	ripk1	Uncharacterized protein. (666 aa)
	A0A1L8FTA7	Ubiquitin-like domain-containing protein. (105 aa)
	A0A1L8FXS1	Uncharacterized protein. (581 aa)
	Peli2.S	Uncharacterized protein. (418 aa)
	A0A1L8G5V1	Ubiquitin-like domain-containing protein. (156 aa)
	A0A1L8G719	Uncharacterized protein. (418 aa)
	A0A1L8G9H3	Glyco_transf_41 domain-containing protein. (92 aa)
	faslg	TNF_2 domain-containing protein. (246 aa)
	fadd	Uncharacterized protein. (188 aa)
	tradd	Death domain-containing protein. (303 aa)
	mlkl	Protein kinase domain-containing protein. (496 aa)
	A0A1L8GLE5	Protein kinase domain-containing protein. (446 aa)
	Faslg.L	TNF_2 domain-containing protein. (248 aa)
	birc2	Uncharacterized protein. (609 aa)
	A0A1L8HCZ9	Uncharacterized protein. (307 aa)
	birc2-2	Uncharacterized protein. (616 aa)
	kxd1	KxDL domain-containing protein. (195 aa)
	ubc	Uncharacterized protein. (533 aa)
	Kxd1.L	KxDL domain-containing protein. (195 aa)
	A0A1L8HX68	Ubiquitin-like domain-containing protein. (173 aa)
	A0A1L8HZL4	Protein kinase domain-containing protein. (523 aa)
	A0A1L8I1X3	NACHT domain-containing protein. (1304 aa)
	A0A1L8I1Y7	NACHT domain-containing protein. (1346 aa)
	A0A1L8I210	NACHT domain-containing protein. (1398 aa)
	A0A1L8I2M8	NACHT domain-containing protein. (1294 aa)
	pdcd6ip	LOC398095 protein. (872 aa)
	fadd-2	Fas-associating death domain-containing protein. (188 aa)
	ogt	Ogt-prov protein. (1063 aa)
	rps27a	MGC81889 protein. (156 aa)
	uba52	MGC80109 protein. (128 aa)
	ubc-2	Ubc-prov protein. (609 aa)
	flot2	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily. (428 aa)
	flot1b	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily. (429 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8ET49	A0A1L8F2K4	A0A1L8ET49	A0A1L8F2K4	RING-type domain-containing protein.	RING-type domain-containing protein.	0.643
A0A1L8ET49	A0A1L8F7B5	A0A1L8ET49	A0A1L8F7B5	RING-type domain-containing protein.	RING-type domain-containing protein.	0.664
A0A1L8ET49	A0A1L8FTA7	A0A1L8ET49	A0A1L8FTA7	RING-type domain-containing protein.	Ubiquitin-like domain-containing protein.	0.558
A0A1L8ET49	A0A1L8FXS1	A0A1L8ET49	A0A1L8FXS1	RING-type domain-containing protein.	Uncharacterized protein.	0.614
A0A1L8ET49	A0A1L8G5V1	A0A1L8ET49	A0A1L8G5V1	RING-type domain-containing protein.	Ubiquitin-like domain-containing protein.	0.689
A0A1L8ET49	A0A1L8HCZ9	A0A1L8ET49	A0A1L8HCZ9	RING-type domain-containing protein.	Uncharacterized protein.	0.620
A0A1L8ET49	A0A1L8HX68	A0A1L8ET49	A0A1L8HX68	RING-type domain-containing protein.	Ubiquitin-like domain-containing protein.	0.558
A0A1L8ET49	Cflar.S	A0A1L8ET49	A0A1L8EPT6	RING-type domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.462
A0A1L8ET49	cflar	A0A1L8ET49	A0A1L8EWU0	RING-type domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.462
A0A1L8ET49	ripk1	A0A1L8ET49	A0A1L8FSB1	RING-type domain-containing protein.	Uncharacterized protein.	0.614
A0A1L8ET49	rps27a	A0A1L8ET49	Q6GMC1	RING-type domain-containing protein.	MGC81889 protein.	0.689
A0A1L8ET49	tradd	A0A1L8ET49	A0A1L8GKL2	RING-type domain-containing protein.	Death domain-containing protein.	0.756
A0A1L8ET49	uba52	A0A1L8ET49	Q6GQF3	RING-type domain-containing protein.	MGC80109 protein.	0.558
A0A1L8ET49	ubc	A0A1L8ET49	A0A1L8HQK4	RING-type domain-containing protein.	Uncharacterized protein.	0.620
A0A1L8ET49	ubc-2	A0A1L8ET49	Q7SY79	RING-type domain-containing protein.	Ubc-prov protein.	0.620
A0A1L8F2K4	A0A1L8ET49	A0A1L8F2K4	A0A1L8ET49	RING-type domain-containing protein.	RING-type domain-containing protein.	0.643
A0A1L8F2K4	A0A1L8FTA7	A0A1L8F2K4	A0A1L8FTA7	RING-type domain-containing protein.	Ubiquitin-like domain-containing protein.	0.675
A0A1L8F2K4	A0A1L8FXS1	A0A1L8F2K4	A0A1L8FXS1	RING-type domain-containing protein.	Uncharacterized protein.	0.732
A0A1L8F2K4	A0A1L8G5V1	A0A1L8F2K4	A0A1L8G5V1	RING-type domain-containing protein.	Ubiquitin-like domain-containing protein.	0.722
A0A1L8F2K4	A0A1L8HCZ9	A0A1L8F2K4	A0A1L8HCZ9	RING-type domain-containing protein.	Uncharacterized protein.	0.694