65 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	spata5l1	Uncharacterized protein. (759 aa)
	tnip2	CCHC NOA-type domain-containing protein. (477 aa)
	rnf167	MGC69137 protein. (336 aa)
	ubc-2	Ubc-prov protein. (609 aa)
	esr1	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues. (585 aa)
	rnf13-2	MGC68556 protein. (381 aa)
	tnip2-2	MGC83548 protein. (475 aa)
	uba52	MGC80109 protein. (128 aa)
	rps27a	MGC81889 protein. (156 aa)
	tnip1-2	LOC495827 protein. (637 aa)
	otub1	Ubiquitin thioesterase. (269 aa)
	rnf128-2	Goliath-related E3 ubiquitin ligase 1. (404 aa)
	A0A1L8I3S6	Uncharacterized protein; Belongs to the AAA ATPase family. (746 aa)
	apc-2	Uncharacterized protein. (2834 aa)
	A0A1L8HX68	Ubiquitin-like domain-containing protein. (173 aa)
	Kxd1.L	KxDL domain-containing protein. (195 aa)
	Apc2.L	Uncharacterized protein. (2148 aa)
	tnip3	CC2-LZ domain-containing protein. (279 aa)
	spata5	Uncharacterized protein. (872 aa)
	otud4-2	Uncharacterized protein. (1023 aa)
	guf1	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (673 aa)
	Vcp.S	Uncharacterized protein; Belongs to the AAA ATPase family. (805 aa)
	apc	Uncharacterized protein. (2827 aa)
	ubc	Uncharacterized protein. (533 aa)
	kxd1	KxDL domain-containing protein. (195 aa)
	A0A1L8HN72	Uncharacterized protein. (2243 aa)
	otud4	Uncharacterized protein. (1065 aa)
	A0A1L8ENS1	Homeobox domain-containing protein. (255 aa)
	A0A1L8EVP7	Homeobox domain-containing protein. (255 aa)
	A0A1L8EZF8	OTU domain-containing protein. (415 aa)
	A0A1L8F019	Uncharacterized protein. (1027 aa)
	Otub2.S	Ubiquitin thioesterase. (279 aa)
	rnf128	RING-type domain-containing protein. (400 aa)
	A0A1L8F4J1	Uncharacterized protein. (840 aa)
	A0A1L8F5F3	OTU domain-containing protein. (493 aa)
	traf3	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (569 aa)
	A0A1L8FC26	Uncharacterized protein. (840 aa)
	cdk1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (302 aa)
	A0A1L8FEC0	Uncharacterized protein. (640 aa)
	Cdk1.L	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (333 aa)
	zranb1	Uncharacterized protein. (701 aa)
	A0A1L8FPE9	OTU domain-containing protein. (403 aa)
	nod1	Uncharacterized protein. (946 aa)
	ripk1	Uncharacterized protein. (666 aa)
	vcpip1	OTU domain-containing protein. (1186 aa)
	A0A1L8FTA7	Ubiquitin-like domain-containing protein. (105 aa)
	A0A1L8FXS1	Uncharacterized protein. (581 aa)
	vcpip1-2	OTU domain-containing protein. (1191 aa)
	Esr1.S	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues. (585 aa)
	Tnfaip3.S	Uncharacterized protein. (781 aa)
	rnf13	RING-type domain-containing protein. (374 aa)
	A0A1L8G5V1	Ubiquitin-like domain-containing protein. (156 aa)
	traf5	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (555 aa)
	Traf6.S	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (556 aa)
	Traf6.L	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (556 aa)
	Otub1.L	Ubiquitin thioesterase. (268 aa)
	A0A1L8GJW4	Methyltransf_11 domain-containing protein. (214 aa)
	A0A1L8GKF8	Uncharacterized protein. (1010 aa)
	A0A1L8GT62	Uncharacterized protein. (910 aa)
	tnip1	CC2-LZ domain-containing protein. (634 aa)
	A0A1L8H082	Uncharacterized protein. (911 aa)
	Tp53.L	P53 domain-containing protein. (137 aa)
	A0A1L8H4Q1	Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. (200 aa)
	A0A1L8HCZ9	Uncharacterized protein. (307 aa)
	yod1	OTU domain-containing protein. (304 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EZF8	A0A1L8F019	A0A1L8EZF8	A0A1L8F019	OTU domain-containing protein.	Uncharacterized protein.	0.532
A0A1L8EZF8	A0A1L8FTA7	A0A1L8EZF8	A0A1L8FTA7	OTU domain-containing protein.	Ubiquitin-like domain-containing protein.	0.730
A0A1L8EZF8	A0A1L8G5V1	A0A1L8EZF8	A0A1L8G5V1	OTU domain-containing protein.	Ubiquitin-like domain-containing protein.	0.849
A0A1L8EZF8	A0A1L8HCZ9	A0A1L8EZF8	A0A1L8HCZ9	OTU domain-containing protein.	Uncharacterized protein.	0.715
A0A1L8EZF8	A0A1L8HX68	A0A1L8EZF8	A0A1L8HX68	OTU domain-containing protein.	Ubiquitin-like domain-containing protein.	0.730
A0A1L8EZF8	rps27a	A0A1L8EZF8	Q6GMC1	OTU domain-containing protein.	MGC81889 protein.	0.849
A0A1L8EZF8	traf3	A0A1L8EZF8	A0A1L8F9Z2	OTU domain-containing protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.532
A0A1L8EZF8	traf5	A0A1L8EZF8	A0A1L8G6D5	OTU domain-containing protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.408
A0A1L8EZF8	uba52	A0A1L8EZF8	Q6GQF3	OTU domain-containing protein.	MGC80109 protein.	0.730
A0A1L8EZF8	ubc	A0A1L8EZF8	A0A1L8HQK4	OTU domain-containing protein.	Uncharacterized protein.	0.715
A0A1L8EZF8	ubc-2	A0A1L8EZF8	Q7SY79	OTU domain-containing protein.	Ubc-prov protein.	0.715
A0A1L8F019	A0A1L8EZF8	A0A1L8F019	A0A1L8EZF8	Uncharacterized protein.	OTU domain-containing protein.	0.532
A0A1L8F019	A0A1L8F4J1	A0A1L8F019	A0A1L8F4J1	Uncharacterized protein.	Uncharacterized protein.	0.416
A0A1L8F019	A0A1L8F5F3	A0A1L8F019	A0A1L8F5F3	Uncharacterized protein.	OTU domain-containing protein.	0.532
A0A1L8F019	A0A1L8FC26	A0A1L8F019	A0A1L8FC26	Uncharacterized protein.	Uncharacterized protein.	0.416
A0A1L8F019	A0A1L8FTA7	A0A1L8F019	A0A1L8FTA7	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.605
A0A1L8F019	A0A1L8FXS1	A0A1L8F019	A0A1L8FXS1	Uncharacterized protein.	Uncharacterized protein.	0.806
A0A1L8F019	A0A1L8G5V1	A0A1L8F019	A0A1L8G5V1	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.711
A0A1L8F019	A0A1L8GT62	A0A1L8F019	A0A1L8GT62	Uncharacterized protein.	Uncharacterized protein.	0.416
A0A1L8F019	A0A1L8H082	A0A1L8F019	A0A1L8H082	Uncharacterized protein.	Uncharacterized protein.	0.416