16 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L8HCC4	Uncharacterized protein. (141 aa)
	ifng	Uncharacterized protein. (182 aa)
	A0A1L8GUI6	Uncharacterized protein. (183 aa)
	A0A1L8G2F8	Uncharacterized protein. (459 aa)
	A0A1L8FYE8	Tyrosine-protein phosphatase non-receptor type. (462 aa)
	A0A1L8FND6	Uncharacterized protein. (232 aa)
	socs3l	Uncharacterized protein. (215 aa)
	Sumo1.L	Ubiquitin-like domain-containing protein. (148 aa)
	Sumo1.S	Ubiquitin-like domain-containing protein. (141 aa)
	Socs3.S	Uncharacterized protein. (250 aa)
	socs3	MGC81248 protein. (199 aa)
	socs1-2	MGC80232 protein. (211 aa)
	ptpn2	Tyrosine-protein phosphatase non-receptor type. (468 aa)
	socs1	Suppressor of cytokine signaling. (211 aa)
	A0A1L8HCJ2	Fibronectin type-III domain-containing protein. (312 aa)
	A0A1L8HCI2	Uncharacterized protein. (399 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8FND6	A0A1L8GUI6	A0A1L8FND6	A0A1L8GUI6	Uncharacterized protein.	Uncharacterized protein.	0.517
A0A1L8FND6	A0A1L8HCI2	A0A1L8FND6	A0A1L8HCI2	Uncharacterized protein.	Uncharacterized protein.	0.448
A0A1L8FND6	A0A1L8HCJ2	A0A1L8FND6	A0A1L8HCJ2	Uncharacterized protein.	Fibronectin type-III domain-containing protein.	0.448
A0A1L8FND6	ifng	A0A1L8FND6	A0A1L8GYI9	Uncharacterized protein.	Uncharacterized protein.	0.517
A0A1L8FND6	socs1	A0A1L8FND6	C0LEJ4	Uncharacterized protein.	Suppressor of cytokine signaling.	0.429
A0A1L8G2F8	A0A1L8GUI6	A0A1L8G2F8	A0A1L8GUI6	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A1L8G2F8	A0A1L8HCI2	A0A1L8G2F8	A0A1L8HCI2	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A1L8G2F8	A0A1L8HCJ2	A0A1L8G2F8	A0A1L8HCJ2	Uncharacterized protein.	Fibronectin type-III domain-containing protein.	0.985
A0A1L8G2F8	ifng	A0A1L8G2F8	A0A1L8GYI9	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A1L8G2F8	socs1	A0A1L8G2F8	C0LEJ4	Uncharacterized protein.	Suppressor of cytokine signaling.	0.403
A0A1L8G2F8	socs1-2	A0A1L8G2F8	Q6GQ99	Uncharacterized protein.	MGC80232 protein.	0.403
A0A1L8GUI6	A0A1L8FND6	A0A1L8GUI6	A0A1L8FND6	Uncharacterized protein.	Uncharacterized protein.	0.517
A0A1L8GUI6	A0A1L8G2F8	A0A1L8GUI6	A0A1L8G2F8	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A1L8GUI6	A0A1L8HCI2	A0A1L8GUI6	A0A1L8HCI2	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A1L8GUI6	A0A1L8HCJ2	A0A1L8GUI6	A0A1L8HCJ2	Uncharacterized protein.	Fibronectin type-III domain-containing protein.	0.992
A0A1L8GUI6	Socs3.S	A0A1L8GUI6	A0A1L8EM41	Uncharacterized protein.	Uncharacterized protein.	0.620
A0A1L8GUI6	ifng	A0A1L8GUI6	A0A1L8GYI9	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8GUI6	socs1	A0A1L8GUI6	C0LEJ4	Uncharacterized protein.	Suppressor of cytokine signaling.	0.741
A0A1L8GUI6	socs1-2	A0A1L8GUI6	Q6GQ99	Uncharacterized protein.	MGC80232 protein.	0.741
A0A1L8GUI6	socs3	A0A1L8GUI6	Q6NU49	Uncharacterized protein.	MGC81248 protein.	0.621