100 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Rab4a	Rab4a-prov protein. (213 aa)
	A0A1L8ELR0	Uncharacterized protein. (206 aa)
	A0A1L8ELR6	Uncharacterized protein. (155 aa)
	rab5d	Uncharacterized protein. (213 aa)
	A0A1L8EQU2	Uncharacterized protein. (118 aa)
	A0A1L8ER89	Uncharacterized protein. (201 aa)
	rab5c	Uncharacterized protein. (215 aa)
	rab22a	Uncharacterized protein. (210 aa)
	rab40c	SOCS box domain-containing protein. (286 aa)
	armc5	BTB domain-containing protein. (934 aa)
	A0A1L8EYZ7	Uncharacterized protein. (201 aa)
	rab15	Uncharacterized protein. (212 aa)
	A0A1L8F0V6	Uncharacterized protein. (715 aa)
	A0A1L8F1U3	Uncharacterized protein. (199 aa)
	A0A1L8F5Q8	Uncharacterized protein. (716 aa)
	A0A1L8F6X6	Uncharacterized protein. (210 aa)
	A0A1L8F8W0	Uncharacterized protein. (207 aa)
	rab15-2	Uncharacterized protein. (212 aa)
	Fam189b.L	Uncharacterized protein. (667 aa)
	Rab5a.L	Uncharacterized protein. (216 aa)
	garem1	CABIT domain-containing protein. (876 aa)
	A0A1L8FT25	Uncharacterized protein. (482 aa)
	A0A1L8FTV3	Uncharacterized protein. (786 aa)
	A0A1L8FU16	TYR_PHOSPHATASE_2 domain-containing protein. (173 aa)
	pter	Uncharacterized protein. (349 aa)
	A0A1L8FW83	Uncharacterized protein. (198 aa)
	garem1-2	CABIT domain-containing protein. (878 aa)
	A0A1L8FYY8	Uncharacterized protein. (213 aa)
	A0A1L8FZ34	Uncharacterized protein. (211 aa)
	ptp4a1	TYR_PHOSPHATASE_2 domain-containing protein. (206 aa)
	A0A1L8G5E4	Uncharacterized protein. (173 aa)
	dnajc27	J domain-containing protein. (276 aa)
	garem2	CABIT domain-containing protein. (900 aa)
	rab32	Uncharacterized protein. (222 aa)
	A0A1L8GB84	Uncharacterized protein. (208 aa)
	Dnajc27.L	J domain-containing protein. (244 aa)
	Rabggtb.S	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (338 aa)
	A0A1L8GFW8	Uncharacterized protein. (217 aa)
	A0A1L8GLR7	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (331 aa)
	A0A1L8GSM8	Uncharacterized protein. (656 aa)
	A0A1L8GT07	Uncharacterized protein. (1275 aa)
	A0A1L8GT28	Uncharacterized protein. (779 aa)
	A0A1L8GTG1	Uncharacterized protein. (370 aa)
	rab19	Uncharacterized protein. (213 aa)
	Rabl2b.L	Uncharacterized protein. (292 aa)
	A0A1L8GZU5	SAM domain-containing protein. (372 aa)
	cgnl1	Uncharacterized protein. (1275 aa)
	A0A1L8H0H5	Uncharacterized protein. (702 aa)
	A0A1L8H0S2	Uncharacterized protein. (656 aa)
	rab34	Uncharacterized protein. (260 aa)
	rab5b	Uncharacterized protein. (215 aa)
	rab38	Uncharacterized protein. (212 aa)
	A0A1L8HBC0	Uncharacterized protein. (175 aa)
	rab34-2	Uncharacterized protein. (259 aa)
	A0A1L8HE83	Uncharacterized protein. (206 aa)
	Rab20.L	Uncharacterized protein. (176 aa)
	Rab5b.L	Uncharacterized protein. (185 aa)
	rab38-2	Uncharacterized protein. (211 aa)
	A0A1L8HNH9	Uncharacterized protein. (220 aa)
	rab8a	Uncharacterized protein. (207 aa)
	fam189a2	Uncharacterized protein. (584 aa)
	A0A1L8HP99	Uncharacterized protein. (720 aa)
	rabggta	RabGGT_insert domain-containing protein. (565 aa)
	A0A1L8HTI4	Uncharacterized protein. (221 aa)
	ptar1	Uncharacterized protein. (432 aa)
	fam189a2-2	Uncharacterized protein. (585 aa)
	rabggta-2	RabGGT_insert domain-containing protein. (565 aa)
	A0A1L8HZJ7	Uncharacterized protein. (215 aa)
	rab36	Uncharacterized protein. (264 aa)
	A0A1L8I2D9	Uncharacterized protein. (227 aa)
	A0A310TNK4	Uncharacterized protein. (721 aa)
	LOC100037231	LOC100037231 protein. (209 aa)
	ptar1-2	Ptar1-b protein. (432 aa)
	rab13	LOC100158399 protein. (201 aa)
	MGC131054	MGC131054 protein. (216 aa)
	rab32-2	MGC130912 protein. (222 aa)
	rab3d	Rab3d protein. (217 aa)
	MGC114680	MGC114680 protein. (278 aa)
	ptp4a2-2	Ptp4a2 protein. (167 aa)
	Q52KZ2_XENLA	Uncharacterized protein. (213 aa)
	rab3a	Rab3a-prov protein. (220 aa)
	rab40c-2	Rab40 protein. (286 aa)
	rab14	LOC494665 protein. (215 aa)
	MGC84213	MGC84213 protein. (225 aa)
	rab40b	MGC85390 protein. (278 aa)
	rab8b	MGC85265 protein. (207 aa)
	garem2-2	MGC84378 protein. (898 aa)
	rab8b-2	Rab8b-prov protein. (207 aa)
	ptp4a1-2	Ptp4a1-prov protein. (173 aa)
	rab23	MGC82152 protein. (238 aa)
	rab3b	MGC84786 protein. (217 aa)
	MGC84778	MGC84778 protein. (225 aa)
	rab25	MGC84182 protein. (216 aa)
	rab6b	MGC83971 protein. (208 aa)
	rab29	MGC80435 protein. (204 aa)
	ptp4a2	MGC80084 protein. (167 aa)
	rab2b	MGC78967 protein. (215 aa)
	ptp4a3-2	XPRL-3. (173 aa)
	rab10	MGC68629 protein. (200 aa)
	rab1a	Rab1-prov protein. (204 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8ELR0	A0A1L8F0V6	A0A1L8ELR0	A0A1L8F0V6	Uncharacterized protein.	Uncharacterized protein.	0.407
A0A1L8ELR0	A0A1L8F5Q8	A0A1L8ELR0	A0A1L8F5Q8	Uncharacterized protein.	Uncharacterized protein.	0.407
A0A1L8ELR0	A0A1L8F8W0	A0A1L8ELR0	A0A1L8F8W0	Uncharacterized protein.	Uncharacterized protein.	0.452
A0A1L8ELR0	A0A1L8GLR7	A0A1L8ELR0	A0A1L8GLR7	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.466
A0A1L8ELR0	Rab4a	A0A1L8ELR0	Q7ZXI8	Uncharacterized protein.	Rab4a-prov protein.	0.450
A0A1L8ELR0	Rabggtb.S	A0A1L8ELR0	A0A1L8GFA6	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.466
A0A1L8ELR0	armc5	A0A1L8ELR0	A0A1L8EYU4	Uncharacterized protein.	BTB domain-containing protein.	0.432
A0A1L8ELR0	ptar1	A0A1L8ELR0	A0A1L8HYB2	Uncharacterized protein.	Uncharacterized protein.	0.474
A0A1L8ELR0	ptar1-2	A0A1L8ELR0	A9UM26	Uncharacterized protein.	Ptar1-b protein.	0.474
A0A1L8ELR0	rab14	A0A1L8ELR0	Q640I3	Uncharacterized protein.	LOC494665 protein.	0.523
A0A1L8ELR0	rab36	A0A1L8ELR0	A0A1L8I0F5	Uncharacterized protein.	Uncharacterized protein.	0.408
A0A1L8ELR0	rabggta	A0A1L8ELR0	A0A1L8HPF6	Uncharacterized protein.	RabGGT_insert domain-containing protein.	0.717
A0A1L8ELR0	rabggta-2	A0A1L8ELR0	A0A1L8HYM5	Uncharacterized protein.	RabGGT_insert domain-containing protein.	0.717
A0A1L8ELR6	A0A1L8F0V6	A0A1L8ELR6	A0A1L8F0V6	Uncharacterized protein.	Uncharacterized protein.	0.407
A0A1L8ELR6	A0A1L8F5Q8	A0A1L8ELR6	A0A1L8F5Q8	Uncharacterized protein.	Uncharacterized protein.	0.407
A0A1L8ELR6	A0A1L8F8W0	A0A1L8ELR6	A0A1L8F8W0	Uncharacterized protein.	Uncharacterized protein.	0.439
A0A1L8ELR6	A0A1L8GLR7	A0A1L8ELR6	A0A1L8GLR7	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.466
A0A1L8ELR6	Rab4a	A0A1L8ELR6	Q7ZXI8	Uncharacterized protein.	Rab4a-prov protein.	0.438
A0A1L8ELR6	Rabggtb.S	A0A1L8ELR6	A0A1L8GFA6	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.466
A0A1L8ELR6	armc5	A0A1L8ELR6	A0A1L8EYU4	Uncharacterized protein.	BTB domain-containing protein.	0.432