23 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L8H8N6	RanBP2-type domain-containing protein. (81 aa)
	A0A1L8H8J1	Uncharacterized protein. (463 aa)
	irak2	Protein kinase domain-containing protein. (672 aa)
	Traf6.L	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (556 aa)
	A0A1L8GHN8	Protein kinase domain-containing protein. (522 aa)
	tab1	PPM-type phosphatase domain-containing protein. (500 aa)
	Traf6.S	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (556 aa)
	A0A1L8G8E8	Uncharacterized protein. (690 aa)
	A0A1L8G5V1	Ubiquitin-like domain-containing protein. (156 aa)
	A0A1L8G366	Protein kinase domain-containing protein. (588 aa)
	tab2	Uncharacterized protein. (690 aa)
	A0A1L8EW93	Uncharacterized protein. (793 aa)
	A0A1L8EP79	Uncharacterized protein. (788 aa)
	ubc-2	Ubc-prov protein. (609 aa)
	rps27a	MGC81889 protein. (156 aa)
	map3k7	MAP3K7 protein. (616 aa)
	LOC398025	TAB1. (498 aa)
	Kxd1.L	KxDL domain-containing protein. (195 aa)
	ubc	Uncharacterized protein. (533 aa)
	kxd1	KxDL domain-containing protein. (195 aa)
	tab3	Uncharacterized protein. (692 aa)
	A0A1L8HCZ9	Uncharacterized protein. (307 aa)
	A0A1L8H8K5	Uncharacterized protein. (84 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EP79	A0A1L8EW93	A0A1L8EP79	A0A1L8EW93	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8EP79	A0A1L8G5V1	A0A1L8EP79	A0A1L8G5V1	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.579
A0A1L8EP79	A0A1L8G8E8	A0A1L8EP79	A0A1L8G8E8	Uncharacterized protein.	Uncharacterized protein.	0.768
A0A1L8EP79	A0A1L8GHN8	A0A1L8EP79	A0A1L8GHN8	Uncharacterized protein.	Protein kinase domain-containing protein.	0.557
A0A1L8EP79	A0A1L8H8J1	A0A1L8EP79	A0A1L8H8J1	Uncharacterized protein.	Uncharacterized protein.	0.773
A0A1L8EP79	A0A1L8H8K5	A0A1L8EP79	A0A1L8H8K5	Uncharacterized protein.	Uncharacterized protein.	0.773
A0A1L8EP79	A0A1L8H8N6	A0A1L8EP79	A0A1L8H8N6	Uncharacterized protein.	RanBP2-type domain-containing protein.	0.483
A0A1L8EP79	A0A1L8HCZ9	A0A1L8EP79	A0A1L8HCZ9	Uncharacterized protein.	Uncharacterized protein.	0.522
A0A1L8EP79	LOC398025	A0A1L8EP79	B7ZQK1	Uncharacterized protein.	TAB1.	0.905
A0A1L8EP79	Traf6.L	A0A1L8EP79	A0A1L8GIM0	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.904
A0A1L8EP79	Traf6.S	A0A1L8EP79	A0A1L8GE35	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.904
A0A1L8EP79	irak2	A0A1L8EP79	A0A1L8GPJ0	Uncharacterized protein.	Protein kinase domain-containing protein.	0.557
A0A1L8EP79	rps27a	A0A1L8EP79	Q6GMC1	Uncharacterized protein.	MGC81889 protein.	0.579
A0A1L8EP79	tab1	A0A1L8EP79	A0A1L8GGZ6	Uncharacterized protein.	PPM-type phosphatase domain-containing protein.	0.905
A0A1L8EP79	tab2	A0A1L8EP79	A0A1L8G2V0	Uncharacterized protein.	Uncharacterized protein.	0.768
A0A1L8EP79	tab3	A0A1L8EP79	A0A1L8HGJ3	Uncharacterized protein.	Uncharacterized protein.	0.773
A0A1L8EP79	ubc	A0A1L8EP79	A0A1L8HQK4	Uncharacterized protein.	Uncharacterized protein.	0.522
A0A1L8EP79	ubc-2	A0A1L8EP79	Q7SY79	Uncharacterized protein.	Ubc-prov protein.	0.522
A0A1L8EW93	A0A1L8EP79	A0A1L8EW93	A0A1L8EP79	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8EW93	A0A1L8G5V1	A0A1L8EW93	A0A1L8G5V1	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.579